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Bisbenzimide HCl (Pibenzimol, Hoechst 33258)

Alias: HOECHST 33258; HOE 33258; Bisbenzimidazole trihydrochloride; Pibenzimol hydrochloride; Hoechst Dye 33258; Hoechst 33258 Trihydrochloride; bisBenzimide H 33258;
Cat No.:V8097 Purity: ≥98%
Bisbenzimide, formerly known as Pibenzimol, Hoechst 33258, is a cell-permeable, benzimidazole dye that binds to the minor groove of double stranded DNA with preference for adenine and thymine-rich sequences.
Bisbenzimide HCl (Pibenzimol, Hoechst 33258)
Bisbenzimide HCl (Pibenzimol, Hoechst 33258) Chemical Structure CAS No.: 23491-45-4
Product category: Fluorescent Dye
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
250mg
500mg
1g
Other Sizes

Other Forms of Bisbenzimide HCl (Pibenzimol, Hoechst 33258):

  • Hoechst 33258 analog 6
  • ortho-iodoHoechst 33258
  • meta-iodoHoechst 33258
  • para-iodoHoechst 33258
  • Hoechst 33258
  • Hoechst 33258 analog 2
  • Hoechst 33258 analog 5
  • Hoechst 33258 analog
  • Hoechst 33258 analog 3
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Bisbenzimide, formerly known as Pibenzimol, Hoechst 33258, is a cell-permeable, benzimidazole dye that binds to the minor groove of double stranded DNA with preference for adenine and thymine-rich sequences.

Biological Activity I Assay Protocols (From Reference)
Targets
IC50 = 51 μM (HeLa cells), 32 μM (HL60 cells), and 15 μM (U937 cells)
ln Vitro
1.1 Hoechst working solution preparation: 10 milligrams should dissolve in 5 mL DMSO. It is advised to store the stock solution in the dark at 4°C or -20°C to prevent recurrent freezing and thawing. 1.2 Hoechst stock solution preparation A Hoechst working solution with a final concentration of 10 μg/mL is created by dissolving the stock solution in either PBS or serum-free cell culture medium. Note: Please modify the Hoechst working fluid concentration based on the current circumstances. 1. Staining of cells 2.1 Suspension plates with six wells a. Discard the supernatant after centrifuging at 1000g for three to five minutes at 4°C. Use PBS to wash twice, for five minutes each time. The density of cells is 1×106/mL. c. After adding 1 mL of the working solution, wait three to ten minutes. c. Centrifuge for 3–4 minutes at 400 g and 4°C, discarding the supernatant. d. Use PBS to wash twice, for five minutes each time. e. Re-suspend the cells in PBS or serum-free culture media. observation using a flow cytometer or a fluorescence microscope 2.2 Cells that adhere On sterile coverslips, cultivate adherent cells (a). b. Aspirate extra cells and remove the coverslip from the culture medium. b. Pour in 100 μL of working solution, then give it a little shake to fully cover. Prelude: 3–10 minutes for cells. d. Wash your heart twice, for five minutes each time. Cursor matter or observation using a flow cytometer. Note 1: Please modify the Hoechst working fluid concentration based on the current circumstances. 2. This product is intended only for use in research and development; it cannot be used for home, medical, or other applications. 3. Please wear a lab coat and immediate gloves when operating for your own health and safety.
Enzyme Assay
Pibenzimol/Hoechst 33258 is a fluorescent dye of benzimidazole derivative. Pibenzimol binds to AT-specific sites in the minor groove of duplex DNA and inhibits topoisomerase I, and DNA polymerase, thereby preventing DNA replication. This agent prolongs the G2 phase of the cell cycle and initiates apoptosis in tumor cells. A benzimidazole antifilarial agent; it is fluorescent when it binds to certain nucleotides in DNA, thus providing a tool for the study of DNA replication; it also interferes with mitosis.
Cell Assay
Staining examples:
Example 1: Hoechst 33258 may be utilized for the detection of nuclei.
Method: For cell staining.
1. Fix, penetrate and seal cells first.
2. Incubate cells with Hoechst 33258 (1:1000; 30 min; dark).
3. Wash cells with PBS for five times and use a fluorescence microscope for image.
Example 2: Hoechst 33258 may be utilized for the detection of nuclei and staining nuclei of live and dead cells (apoptotic/necrotic).
Method: For cell staining.
1. Incubate cultured cells with 1 mL of the solution prepared with Hoechst 33258 (7.5 μg/mL; 37℃; 5% CO2; 30 min; 1×PBS).
2. Use a Evos FLc Fluorescent Inverted Microscope for image.
Example 3: Hoechst 33258 may be utilized for the detection of nuclei, as well as in apoptosis detection assays.
Method: For cell staining.
1. Fix cells in paraformaldehyde after transfection and wash cells with PBS.
2. Stain cells with Hoechst 33258 (30 min; 20℃; dark).
3. Use a fluorescence microscope for image.
Toxicity/Toxicokinetics
rat LD50 intravenous 32200 ug/kg BEHAVIORAL: SOMNOLENCE (GENERAL DEPRESSED ACTIVITY); LUNGS, THORAX, OR RESPIRATION: DYSPNEA; SKIN AND APPENDAGES (SKIN): HAIR: OTHER National Technical Information Service., PB84-171206
mouse LD50 intravenous 36900 ug/kg BEHAVIORAL: SOMNOLENCE (GENERAL DEPRESSED ACTIVITY); LUNGS, THORAX, OR RESPIRATION: DYSPNEA; SKIN AND APPENDAGES (SKIN): HAIR: OTHER National Technical Information Service., PB84-171206
dog LD intravenous >22400 ug/kg SENSE ORGANS AND SPECIAL SENSES: LACRIMATION: EYE; LUNGS, THORAX, OR RESPIRATION: DYSPNEA; GASTROINTESTINAL: CHANGES IN STRUCTURE OR FUNCTION OF SALIVARY GLANDS National Technical Information Service., PB84-171206
References

[1]. Newly synthesized bis-benzimidazole derivatives exerting anti-tumor activity through inductionof apoptosis and autophagy. Bioorg Med Chem Lett. 2012 Oct 1;22(19):6297-300.

[2]. Synthesis, DNA/RNA affinity and antitumour activity of new aromatic diamidines linked by 3,4-ethylenedioxythiophene. Eur J Med Chem. 2011 Feb;46(2):743-55.

Additional Infomation
A benzimidazole antifilarial agent; it is fluorescent when it binds to certain nucleotides in DNA, thus providing a tool for the study of DNA replication; it also interferes with mitosis.
See also: Bisbenzimidazole (annotation moved to).
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H27CL3N6O
Molecular Weight
533.882
Exact Mass
532.131
Elemental Analysis
C, 56.24; H, 5.10; Cl, 19.92; N, 15.74; O, 3.00
CAS #
23491-45-4
Related CAS #
Hoechst 33258;23491-44-3; Hoechst 33258 trihydrochloride;23491-45-4;Hoechst 33258 analog;258843-62-8;Hoechst 33258 analog 2;23491-54-5;Hoechst 33258 analog 3;23554-98-5;Hoechst 33258 analog 5;23491-55-6;Hoechst 33258 analog 6;129244-66-2
PubChem CID
31953
Appearance
Yellow to green solid powder
Boiling Point
643.1ºC at 760mmHg
Melting Point
314 °C
Flash Point
342.7ºC
LogP
6.639
Hydrogen Bond Donor Count
6
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
35
Complexity
634
Defined Atom Stereocenter Count
0
InChi Key
4-[6-(4-methyl-1-piperazinyl)[2,6'-bi-1H-benzimidazol]-2'-yl]-phenol, trihydrochloride
InChi Code
SMNPLAKEGAEPJD-UHFFFAOYSA-N
Chemical Name
Bisbenzimide Bisbenzimide trihydrochloride Pibenzimol Pibenzimol HCl Pibenzimol trihydrochloride. H 33258 HOE 33258 Hoechst 33258 NSC 322921.
Synonyms
HOECHST 33258; HOE 33258; Bisbenzimidazole trihydrochloride; Pibenzimol hydrochloride; Hoechst Dye 33258; Hoechst 33258 Trihydrochloride; bisBenzimide H 33258;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~187.31 mM)
H2O : ~12.5 mg/mL (~23.41 mM)
Solubility (In Vivo)
Solubility in Formulation 1: 9.09 mg/mL (17.03 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with sonication (<60°C).

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.8731 mL 9.3654 mL 18.7308 mL
5 mM 0.3746 mL 1.8731 mL 3.7462 mL
10 mM 0.1873 mL 0.9365 mL 1.8731 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
/

Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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