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CA3 (CIL-56)

Alias: CA3; CA-3; CA 3; CIL-56; 300802-28-2; 2,7-bis(piperidin-1-ylsulfonyl)-9H-fluoren-9-one oxime; CA3 - Bio-X; 2,7-Bis(1-piperidinylsulfonyl)-9H-fluoren-9-one oxime; CA3; N-[2,7-bis(piperidine-1-sulfonyl)-9H-fluoren-9-ylidene]hydroxylamine; 2,7-bis(piperidinosulfonyl)-9H-fluoren-9-one oxime; CIL56; CIL 56
Cat No.:V3193 Purity: ≥98%
CA3 (also known as CIL56) is a novel and potent inhibitor ofYAP1/Teadtranscriptional activity.
CA3 (CIL-56)
CA3 (CIL-56) Chemical Structure CAS No.: 300802-28-2
Product category: Ferroptosis
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Purity: ≥98%

Product Description

CA3 (also known as CIL56) is a novel and potent inhibitor of YAP1/Tead transcriptional activity. In vitro and in vivo studies have shown that CA3 has a remarkable inhibitory effect on the growth of esophageal adenocarcinoma cells, particularly those that express high levels of the YAP1 gene. Normally, radiation-resistant cells develop strong cancer stem cell (CSC) properties and an aggressive phenotype, but CA3 can successfully suppress these phenotypes by preventing proliferation, inducing apoptosis, reducing the formation of tumor spheres, and decreasing the percentage of ALDH1+ cells.

Biological Activity I Assay Protocols (From Reference)
Targets
YAP/TEAD interaction
ln Vitro
In vitro, CA3 significantly reduces the growth of esophageal adenocarcinoma cells. Inducing apoptosis, decreasing tumor sphere formation, and reducing the number of ALDH1+ cells are all possible effects of CA3. After cotransfection of each transcriptional factor's individual promoter luciferases in 293T cells, CA3 specifically inhibits Tead/YAP1 transcriptional activity but has no effect on Super-TOP/Wnt, CBF1/Notch, or AP-1. The CSC properties that are enriched in radiation-resistant esophageal adenocarcinoma cells are preferentially inhibited by CA3[1].
ln Vivo
In a xenograft model, CA3 exhibits potent antitumor activity with no discernible toxicity[1].
CA3 exerts strong antitumor effects in inducible high YAP xenograft mouse model in vivo[1]
To further confirm the antitumor effects of CA3 result from targeting YAP1 in vivo, we utilized inducible YAP1 high SKGT-4 (Dox+) cells xenograft model. Nude mice were implanted with Dox− and Dox+ SKGT-4 cells at 1 × 106 cells per mouse. At this concentration, we observed that only Dox+ SKGT-4 cells were able to form tumors after 10–14 days of injection (Fig. 5B), indicating that YAP1 is necessary to drive tumor growth in vivo. To determine the effects of treatment with CA3 in inhibition of YAP-inducible tumor growth in vivo, we randomly placed mice bearing Dox+ SKGT-4 EAC xenografts in two groups and then gave them treatment with control phosphate-buffered saline or CA3 at 1 mg/kg. At the end of our 3-week dosing schedule, SKGT-4 xenograft tumor weights and volumes and the mice’s body weights were measured. Results from in vivo SKGT-4 Dox+ xenograft model demonstrated that mice with Dox+ SKGT-4 xenografts treated with CA3 greatly reduced tumor sizes and weights in vivo (Fig.5B&5C), whereas tumors did not form in mice implanted with Dox− SKGT-4 cells over the whole experimental period (Figure 5B). Mice’s body weights did not differ significantly between CA3 treatment and control group (Fig 5D). In addition, immunohistochemistry further confirmed in mice tumor tissues that expression of YAP1, SOX9 and KI67 was greatly reduced in mice with SKGT-4 Dox+ treated with CA3 (Fig. 5E). Thus, CA3 effectively suppress EAC tumor growth in vivo and these effects owe, at least in part, to inhibition of the stemness genes YAP1 and SOX9.
CA3 synergizes with 5-FU in inhibiting growth of EAC cells in vitro and in vivo[1]
To determine the effects of treatment with CA3 alone or in combination with 5-FU on inhibition of the growth of EAC cell lines, we first seeded four EC cell lines with constitutive high YAP1 expression (SKGT-4, JHESO, OACP, and YES-6) in 96-well plates and treated them with CA3 alone, 5-FU alone, or the combination of CA3 and 5-FU at indicated concentrations. The results shown in Fig. 6A demonstrated that although CA3 produced dose-dependent decreases in the growth of these four cell lines, the combination of CA3 and 5-FU significantly synergized to inhibit their growth especially in the combination of CA3 and 5-FU at the maximum extent. To further examine the inhibition of CA3 on EAC cells are YAP1 dependent, we treated Dox+ (YAP1 induced) and Dox− SKGT4 (PIN20YAP1) cells with CA3 alone, 5-FU alone, or the combination, we found that CA3 alone preferentially inhibited the growth of YAP1 high SKGT-4 cells (Dox+) compared to YAP1 low SKGT-4 cells (Dox−) and in a dose dependent manner (Fig. 6B). Moreover, treatment with the combination of CA3 and 5-FU produced the greatest inhibition of growth of both Dox+ and Dox− SKGT-4 cells (Fig.6B). These findings indicated that treatment with CA3 synergize with 5-FU in GAC cell growth inhibition.
Enzyme Assay
The SOX9 luciferase reporter was described previously. The 5 × -UAS-luciferase reporter and Gal4-TEAD4 constructs, also described previously, were obtained from Dr. Johnson of MD Anderson Cancer Center. Transient cotransfection esophageal adenocarcinoma cells with the SOX9 luciferase reporter and a Renilla vector or 5 × -UAS-luciferase reporter and Gal4-TEAD4 with a CMV-β-gal construct was performed as described previously.
Cell Assay
SKGT-4 and JHESO cells are seeded onto 6-well plates (1 × 105/well) in DMEM and cultured for 24 hours to allow for cell attachment. The cells are then exposed for 48 hours to 0.1% DMSO (control) or CA3 at various doses as recommended. The cells are then collected, fixed with methanol, washed, treated with RNase A, stained with propidium iodide for DNA, and subjected to flow cytometry analysis of DNA histograms and cell-cycle phase distributions.
Cell proliferation assay[1]
The EAC cells and their resistant counterparts were treated with 0.1% dimethyl sulfoxide (control),CA3 at different doses For combination treatment experiments, treatment of the cells with CA3, 5-FU, or a combination at different concentrations was administered for 6 days as indicated, and the cell viability was assessed using an MTS assay as described previously. All assays were performed in triplicate and repeated at least three times.
Flow cytometry and apoptotic analysis[1]
Analysis of EAC cell apoptosis using flow cytometry was performed as described previously. In brief, SKGT-4 and JHESO cells were seeded onto six-well plates (1 × 105 per well) in Dulbecco’s modified Eagle’s medium and cultured for 24 hours to allow for cell attachment. The cells were then treated with 0.1% dimethyl sulfoxide(control) or CA3 at different doses as indicated for 48 hours. Next, the cells were harvested, fixed with methanol, washed, treated with RNase A, and stained for DNA with propidium iodide, and their DNA histograms and cell-cycle phase distributions were analyzed using flow cytometry with a FACS Calibur instrument.
Protein extraction and Western blot analysis[1]
Proteins were isolated from EAC cells treated with CA3 as indicated and analyzed using Western blotting as described previously.
Animal Protocol
In vivo xenograft mouse model[1]
In vivo experiments have been conducted in accordance with an Institutional Animal Care and Use Committee (IACUC). SKGT-4 (PIN20YAP1) cells (1 × 106) without (Dox−) or with (Dox+) YAP1 induction by Doxycycline were inoculated into nude mice (n = 5/group). The mice in the Dox+ group were fed drinking water containing 2.5% sucrose and 2.5% Doxycycline, whereas those in the Dox− group were fed water containing only 2.5% sucrose. After 10 days, CA3 was introperitoneally injected into the animals in the Dox+ group at 1 mg/kg/mouse three times a week for total 3 weeks.

In a JHESO xenograft model of EAC, 2 × 106 JHESO cells were subcutaneously injected into nude mice (n = 5/group). After about 10 days, the mice underwent intraperitoneal injection of CA3 at 1 mg/kg/mouse, 5-FU at 30 mg/kg/mouse, or a combination of them three times a week for total 3 weeks. A control group was given phosphate-buffered saline at 100 µl/mouse. The mice’s tumor volumes, tumor weights, and body weights were measured as described previously (4). All measurements were compared using an unpaired Student t-test.
PBS; 1 mg/kg; i.p.
JHESO xenograft mice model of esophageal adenocarcinoma
References

[1]. Mol Cancer Ther . 2018 Feb;17(2):443-454.

Additional Infomation
Mounting evidence suggests that the Hippo coactivator Yes-associated protein 1 (YAP1) is a major mediator of cancer stem cell (CSC) properties, tumor progression, and therapy resistance as well as often a terminal node of many oncogenic pathways. Thus, targeting YAP1 may be a novel therapeutic strategy for many types of tumors with high YAP1 expression, including esophageal adenocarcinoma. However, effective YAP1 inhibitors are currently lacking. Here, we identify a small molecule (CA3) that not only has remarkable inhibitory activity on YAP1/Tead transcriptional activity but also demonstrates strong inhibitory effects on esophageal adenocarcinoma cell growth especially on YAP1 high-expressing esophageal adenocarcinoma cells both in vitro and in vivo Remarkably, radiation-resistant cells acquire strong cancer stem cell (CSC) properties and aggressive phenotype, while CA3 can effectively suppress these phenotypes by inhibiting proliferation, inducing apoptosis, reducing tumor sphere formation, and reducing the fraction of ALDH1+ cells. Furthermore, CA3, combined with 5-FU, synergistically inhibits esophageal adenocarcinoma cell growth especially in YAP1 high esophageal adenocarcinoma cells. Taken together, these findings demonstrated that CA3 represents a new inhibitor of YAP1 and primarily targets YAP1 high and therapy-resistant esophageal adenocarcinoma cells endowed with CSC properties. Mol Cancer Ther; 17(2); 443-54. ©2017 AACR.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C23H27N3O5S2
Molecular Weight
489.61
Exact Mass
489.139
Elemental Analysis
C, 56.42; H, 5.56; N, 8.58; O, 16.34; S, 13.10
CAS #
300802-28-2
Related CAS #
300802-28-2
PubChem CID
654092
Appearance
White to off-white solid powder
Density
1.5±0.1 g/cm3
Boiling Point
741.7±70.0 °C at 760 mmHg
Flash Point
402.4±35.7 °C
Vapour Pressure
0.0±2.6 mmHg at 25°C
Index of Refraction
1.714
LogP
3.66
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
8
Rotatable Bond Count
4
Heavy Atom Count
33
Complexity
870
Defined Atom Stereocenter Count
0
SMILES
S(C1C=CC2=C(/C(/C3C=C(C=CC2=3)S(N2CCCCC2)(=O)=O)=N/O)C=1)(N1CCCCC1)(=O)=O
InChi Key
XYZXEEIUKQGUHB-UHFFFAOYSA-N
InChi Code
InChI=1S/C23H27N3O5S2/c27-24-23-21-15-17(32(28,29)25-11-3-1-4-12-25)7-9-19(21)20-10-8-18(16-22(20)23)33(30,31)26-13-5-2-6-14-26/h7-10,15-16,27H,1-6,11-14H2
Chemical Name
N-[2,7-bis(piperidin-1-ylsulfonyl)fluoren-9-ylidene]hydroxylamine
Synonyms
CA3; CA-3; CA 3; CIL-56; 300802-28-2; 2,7-bis(piperidin-1-ylsulfonyl)-9H-fluoren-9-one oxime; CA3 - Bio-X; 2,7-Bis(1-piperidinylsulfonyl)-9H-fluoren-9-one oxime; CA3; N-[2,7-bis(piperidine-1-sulfonyl)-9H-fluoren-9-ylidene]hydroxylamine; 2,7-bis(piperidinosulfonyl)-9H-fluoren-9-one oxime; CIL56; CIL 56
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: > 95 mg/mL
Water: < 1mg/mL
Ethanol: < 1mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: 2.5 mg/mL (5.11 mM) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), suspension solution; with heating and sonication.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (4.25 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (4.25 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


Solubility in Formulation 4: 5% DMSO+40% PEG 300+5% Tween 80+50% ddH2O: 0.5mg/ml

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.0424 mL 10.2122 mL 20.4244 mL
5 mM 0.4085 mL 2.0424 mL 4.0849 mL
10 mM 0.2042 mL 1.0212 mL 2.0424 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT04643327 Recruiting Drug: Levetiracetam
Drug: Placebo
Parkinson Disease
Memory Impairment
The University of Queensland February 9, 2021 Phase 2
NCT03896659 Recruiting Drug: Hydrocortisone Oral
Drug: Placebo Oral Tablet
Depression
Hydrocortisone
University of Texas
Southwestern Medical
Center
October 1, 2019 Phase 4
NCT04951700 Recruiting Other: Other Aging
Schizophrenia
University of Texas
Southwestern Medical
Center
July 1, 2021
NCT01522560 Completed Other: Feedback group
Other: Control group
Pediatric Anesthesia
Department
The Cleveland Clinic July 2011 Not Applicable
Biological Data
  • CA3 (CIL56)

    Identification of novel YAP1 inhibitor CA3 and determination of its effects on YAP1 high esophageal adenocarcinoma cells.2018 Feb;17(2):443-454.

  • CA3 (CIL56)

    CA3 potently inhibits esophageal adenocarcinoma cell growth and induces tumor cell death.2018 Feb;17(2):443-454.

  • CA3 (CIL56)

    CA3 inhibits YAP1 expression and transcriptional activity in esophageal adenocarcinoma cell lines, especially those with high YAP1.2018 Feb;17(2):443-454.

  • CA3 (CIL56)

    CA3 preferentially inhibits CSC properties enriched in radiation-resistant esophageal adenocarcinoma cells.2018 Feb;17(2):443-454.

  • CA3 (CIL56)

    CA3 suppresses ALDH1+cell tumor sphere and exerts strong antitumor effects in inducible high YAP xenograft model.2018 Feb;17(2):443-454.

  • CA3 (CIL56)

    CA3 synergizes with 5-FU in inhibiting growth of esophageal adenocarcinoma cellsin vitroandin vivo.2018 Feb;17(2):443-454.

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