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Samuraciclib HCl (ICEC0942; PPDA-001; CT7001)

Alias: PPDA-001; PPDA-001; PPDA-001; GTPL 9903; GTPL9903; GTPL-9903; ICEC0942; ICEC 0942; ICEC-0942; CT7001; CT 7001;CT-7001
Cat No.:V5212 Purity: ≥98%
Samuraciclib HCl (ICEC-0942; PPDA001; CT-7001), the hydrochloride salt of Samuraciclib, is a novel, potent, orally bioavailable and selective CDK7 inhibitor with potential anticancer activity.
Samuraciclib HCl (ICEC0942; PPDA-001; CT7001)
Samuraciclib HCl (ICEC0942; PPDA-001; CT7001) Chemical Structure CAS No.: 1805789-54-1
Product category: CDK
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
10mg
25mg
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Other Forms of Samuraciclib HCl (ICEC0942; PPDA-001; CT7001):

  • Samuraciclib (CEC0942; PPDA001; CT7001)
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Samuraciclib HCl (ICEC-0942; PPDA001; CT-7001), the hydrochloride salt of Samuraciclib, is a novel, potent, orally bioavailable and selective CDK7 inhibitor with potential anticancer activity. Its IC50 values are 41 nM and 578 nM, respectively, for CDK2/cycE1 and CDK7/CycH/MAT1. Cancer treatment may be possible with it. IC50 values for CDK1, CDK2, CDK5, and CDK9 were 45-, 15-, 230-, and 30-fold higher than that of CDK7, which it selectively inhibits at a 40nM concentration. GI50 values range between 0.2 and 0.3 µM, indicating that a broad spectrum of cancer types are sensitive to CDK7 inhibition in vitro.

Biological Activity I Assay Protocols (From Reference)
Targets
CDK7 (IC50 = 41 nM); CDK2 (IC50 = 578 nM); CDK1 (IC50 = 1.8 μM); CDK4 (IC50 = 49 μM); CDK5 (IC50 = 9.4 μM); CDK6 (IC50 = 41 nM); CDK7 (IC50 = 34 μM); CDK9 (IC50 = 1.2 μMM)
ln Vitro
ICEC0942 inhibits CDK7 in a wide range of cancer types, with GI50 values ranging from 0.2 to 0.3 µM. In the MCF7 breast cancer cell line, ICEC0942 dose- and time-dependently inhibits the phosphorylation of PolII, CDK1, CDK2, and RB (retinoblastoma). ICEC0942 stimulates apoptosis and cell cycle arrest by preventing CDK7 substrate phosphorylation[1].
ln Vivo
ICEC0942 has strong anti-tumor effects in colorectal and breast cancer xenografts. Male CD1 mice are given 10 mg/kg ICEC0942 intravenously (IV), subcutaneously (SC), or orally (PO) for pharmacokinetic purposes. The biphasic decline in ICEC0942 levels in plasma suggests that the compound is rapidly distributed into tissues. Cl(plasma) is measured at 78 ml/min/kg in male CD1 mice after receiving ICEC0942 intraperitoneally at a dose of 10 mg/kg. Ratio of blood to plasma (Bl/Pl) is 1.81. ICEC0942 has a moderate half-life for this species, lasting 1.9 hours. One PO administration (100 mg/kg) of ICEC0942 results in only a small amount of metabolization—13.5%—after two and four hours. Comparing oral bioavailability (F%) at 30% with single PO and IV administration at 10 mg/kg for exposure (AUCt). The median Tmax for PO administration is two hours, and a higher dose has no effect. AUCt, or the total exposure over time, and Cmax have a linear relationship with dose within this dose range. Six hours after administration, there is a noticeable build-up of ICEC0942 in the tumors of tumor-bearing mice. Tumor ICEC0942 levels are not as high as plasma levels[1].
Animal Protocol
seven-week old female nu/nu-BALB/c athymic nude mice with tumour xenograft
100 mg/kg/day
PO
References

[1].Mol Cancer Ther . 2018 Jun;17(6):1156-1166.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C22H31CLN6O
Molecular Weight
430.981
Exact Mass
430.22
Elemental Analysis
C, 61.31; H, 7.25; Cl, 8.23; N, 19.50; O, 3.71
CAS #
1805789-54-1
Related CAS #
Samuraciclib hydrochloride hydrate;Samuraciclib hydrochloride hydrate;Samuraciclib;1805833-75-3
Appearance
Solid powder
SMILES
CC(C)C1=C2N=C(C=C(N2N=C1)NCC3=CC=CC=C3)NC[C@H]4CCNC[C@@H]4O.Cl
InChi Key
YMNPLAHCOLEZJE-ZFNKBKEPSA-N
InChi Code
InChI=1S/C22H30N6O.ClH/c1-15(2)18-13-26-28-21(25-11-16-6-4-3-5-7-16)10-20(27-22(18)28)24-12-17-8-9-23-14-19(17)29;/h3-7,10,13,15,17,19,23,25,29H,8-9,11-12,14H2,1-2H3,(H,24,27);1H/t17-,19+;/m1./s1
Chemical Name
(3R,4R)-4-[[[7-(benzylamino)-3-propan-2-ylpyrazolo[1,5-a]pyrimidin-5-yl]amino]methyl]piperidin-3-ol;hydrochloride
Synonyms
PPDA-001; PPDA-001; PPDA-001; GTPL 9903; GTPL9903; GTPL-9903; ICEC0942; ICEC 0942; ICEC-0942; CT7001; CT 7001;CT-7001
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: 86~100 mg/mL (199.6~232.0 mM)
Ethanol: 15 mg/mL (~34.8 mM)
Water: 86 mg/mL (~199.6 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (5.80 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (5.80 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (5.80 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


Solubility in Formulation 4: 100 mg/mL (232.03 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with ultrasonication.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3203 mL 11.6015 mL 23.2029 mL
5 mM 0.4641 mL 2.3203 mL 4.6406 mL
10 mM 0.2320 mL 1.1601 mL 2.3203 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • ICEC0942 is a CDK7 selective inhibitor of cancer cell growth. Mol Cancer Ther . 2018 Jun;17(6):1156-1166.
  • ICEC0942 inhibits phosphorylation of CDK7 substrates, to promote cell cycle arrest and apoptosis. Mol Cancer Ther . 2018 Jun;17(6):1156-1166.
  • Inhibition of MCF7 tumour xenografts by ICEC0942 is accompanied by reduction in phosphorylation of CDK7 substrates. Mol Cancer Ther . 2018 Jun;17(6):1156-1166.
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