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Cy5.5 (Sulfo-Cyanine5.5)

Cat No.:V41487 Purity: ≥98%
Cy5.5 is a CY dye.
Cy5.5 (Sulfo-Cyanine5.5)
Cy5.5 (Sulfo-Cyanine5.5) Chemical Structure CAS No.: 210892-23-2
Product category: New3
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
50mg
Other Sizes

Other Forms of Cy5.5 (Sulfo-Cyanine5.5):

  • Cy5.5-SE
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Cy5.5 is a CY dye. CY is the abbreviation of Cyanine, which is a compound composed of two nitrogen atoms connected by an odd number of methyl units. Cyanine compounds have the characteristics of long wavelength, adjustable absorption and emission, high extinction coefficient, good water solubility, and relatively simple synthesis. CY dyes are often used for labeling proteins, antibodies and small molecule compounds. For labeling protein antibodies, the binding can be completed through a simple mixing reaction. Below we introduce the labeling method for protein antibody labeling, which has certain reference significance. . Storage: Protect from light.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
The optimal stock solution preparation 1. Preparing proteins Add protein (antibody) at a concentration of 2 mg/mL to get the labeling effect. 1) The protein solution's pH should be 8.5±0.5. In case the pH falls below 8.0, utilize 1 M carbon dioxide. 2) The labeling efficiency will be significantly decreased if the protein content is less than 2 mg/mL. The ideal labeling efficiency can be achieved by ensuring that the protein content ranges from 2 to 10 mg/mL. 3) To ensure optimal labeling efficacy, the protein needs to be in a clear buffer that contains primary amines (such Tris or glycine) and ammonium ions. 2. Dye preparation Mix CY dye with anhydrous DMSO to get a 10 mM stock solution. After being aliquoted, the CY storage solution should be stored in the dark at -20°C or -80°C. Mix vigorously with a glass tube or vortex. 3. The quantity of working dye solution The amount of labeled protein determines how much CY dye is needed for the labeling reaction. The following is the ideal protein and CY dye dosage: Assume that 500 μL of 2 mg/mL IgG (MW = 150,000) is the necessary labeled protein. Dissolve a tube containing 1 mg of CY dye in 100 μL of DMSO to obtain the needed CY volume of 3.95 μL. Using CY3-NHS ester as an example, the calculation procedure is as follows in detail: 1) mmol (IgG) = mg/mL (IgG) ×mL (IgG) / MW (IgG) = 2 mg/mL×0.5 mL / 150,000 mg/mmol = 6.7×10-6 mmol 2) mmol (CY3-NHS ester) = mmol (IgG) ×10 = 6.7×10-6 mmol×10 = 6.7×10-5 mmol 3) μL (methyl-ketone succinate) = mmol (ketone succinate) ×MW (ketone succinate) / mg/μL (ketone succinate) = 6.7×10-5 mmol× 590.15 mg/mmol / 0.01 mg/μL = 3.95 μL (ketone succinate succinate) Method of usage 1. Labeling response 1) Carefully measure out a fresh carrier containing 10 mg/mL of CY dye. Mix with a gentle shake to combine, then quickly gather the centrifuged sample from the bottom of the reaction tube. Add to the 0.5 mL protein sample solution. Avoid copying 2) Place the reaction tube in a dimly lit area, give it a gentle shake, and stroll for 60 minutes under the initial conditions. Every week, for ten to fifteen minutes, carefully flip the reaction tube over many times to 2. Desalting and inhibiting proteins Using SepHadex G-25 column blocked dye conjugates as an example, the methodology that follows is used. 1) As directed by the manufacturer, set up the SepHadex G-25 column. 2) Place the reaction mixture into the SepHadex G-25 column's upper section. 3) Add PBS (pH 7.2–7.4) when the sample dips below the top resin's surface. 4) To finish columnar shrinking, add more PBS (pH 7.2–7.4) right away to the intended sample. Put the parts together that contain the chosen dye-protein combination.
ln Vivo
Cy5.5-labeled Factor VIIa was created for tumor imaging. Cy5.5 tagged with these inhibitory proteins localized to tumor xenografts for at least 14 days, whereas unbound Cy5.5 did not localize to any xenografts. This method of visualizing anti-tissue factors in VECs can be utilized to detect initial tumors and metastases, monitoring, and in vivo therapy responses [1]. pH/temperature-sensitive magnetic nanoconductor (Cy5.5-Lf-MPNA nanoconductor) associated with Cy5.5-labeled lactoferrin was developed as a promising imaging agent for preoperative MRI and intraoperative fingerprint imaging of stellate tumors [2].
References
[1]. Ptaszek M. Rational design of fluorophores for in vivo applications. Prog Mol Biol Transl Sci. 2013;113:59-108.
[2]. Zhu S, et al. Visualizing cancer and response to therapy in vivo using Cy5.5-labeled factor VIIa and anti-tissue factor antibody. J Drug Target. 2015 Apr;23(3):257-65.
[3]. Shindy, H. A. (2017). Fundamentals in the chemistry of cyanine dyes: A review. Dyes and Pigments, 145, 505–513. doi:10.1016/j.dyepig.2017.06.029
[4]. Jiang L, et al. pH/temperature sensitive magnetic nanogels conjugated with Cy5.5-labled lactoferrin for MR and fluorescence imaging of glioma in rats. Biomaterials. 2013 Oct;34(30):7418-28.
[5]. Lim B, et al. A Unique Recombinant Fluoroprobe Targeting Activated Platelets Allows In Vivo Detection of Arterial Thrombosis and Pulmonary Embolism Using a Novel Three-Dimensional Fluorescence Emission Computed Tomography (FLECT) Technology. Theranostics. 2017 Feb 26;7(5):1047-1061.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C41H44N2O14S4
Molecular Weight
917.053067207336
CAS #
210892-23-2
Related CAS #
Cy5.5 acetate;Cy5.5 TEA;Cy5.5-SE;442912-55-2
Appearance
Typically exists as solids (or liquids in special cases) at room temperature
SMILES
S(C1=CC(=CC2=C1C=CC1=C2C(C)(C)C(/C=C/C=C/C=C2\C(C)(C)C3C4C=C(C=C(C=4C=CC=3N\2CC)S(=O)(=O)O)S(=O)(=O)[O-])=[N+]1CCCCCC(=O)O)S(=O)(=O)O)(=O)(=O)O
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~109.05 mM)
H2O : ~5 mg/mL (~5.45 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 4.17 mg/mL (4.55 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 41.7 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 4.17 mg/mL (4.55 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 41.7 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: 5 mg/mL (5.45 mM) in PBS (add these co-solvents sequentially from left to right, and one by one), clear solution; with ultrasonication (<60°C).


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.0905 mL 5.4523 mL 10.9045 mL
5 mM 0.2181 mL 1.0905 mL 2.1809 mL
10 mM 0.1090 mL 0.5452 mL 1.0905 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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