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DNMDP

Cat No.:V10798 Purity: ≥98%
DNMDP is a novel and potent cancer-cytotoxic modulator of PDE3A
DNMDP
DNMDP Chemical Structure CAS No.: 328104-79-6
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
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Other Forms of DNMDP:

  • (R)-DNMDP
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description

DNMDP is a novel and potent cancer-cytotoxic modulator of PDE3A. It binds to PDE3A, promotes an interaction between PDE3A and Schlafen 12 (SLFN12); coexpression of SLFN12 with PDE3A correlates with DNMDP sensitivity, whereas depletion of SLFN12 results in decreased DNMDP sensitivity.

Biological Activity I Assay Protocols (From Reference)
ln Vitro
Within 48 hours, DNMDP (0-1000 μM) exhibits notable cell-selective cytotoxicity [1]. Following DNMDP treatment, HeLa cells exhibit apoptosis, as evidenced by cleavage of poly-ADP ribose polymerase (PARP) and caspase activity measured by the caspase-sensitive luciferase assay. DNMDP selectively inhibits PDE3A and PDE3B at a dose of 100 nM, inhibits PDE10 rather slightly, and has little to no effect on other phosphodiesterases [1].
Cell Assay
Cell Viability Assay[1]
Cell Types: NCI-H1563, NCI-H2122, HeLa, A549, MCF7 and PC3 Cell
Tested Concentrations: 0-1000 μM
Incubation Duration: 48 hrs (hours)
Experimental Results: EC50 for two additional assays ranged from 10 to 100 nM EC50 was greater than 1 µM between lung adenocarcinoma cell lines NCI-H1563 and NCI-H2122 and HeLa cervical cancer cells, but A549, MCF7 and PC3 cells.
References

[1]. Identification of cancer-cytotoxic modulators of PDE3A by predictive chemogenomics. Nat Chem Biol. 2016 Feb;12(2):102-8.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C15H20N4O3
Molecular Weight
304.344303131104
Exact Mass
304.153
CAS #
328104-79-6
Related CAS #
(R)-DNMDP;1630760-60-9
PubChem CID
2874250
Appearance
Orange to red solid powder
Density
1.3±0.1 g/cm3
Index of Refraction
1.613
LogP
1.49
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
4
Heavy Atom Count
22
Complexity
456
Defined Atom Stereocenter Count
0
InChi Key
YOSSKNZHADPXJX-UHFFFAOYSA-N
InChi Code
InChI=1S/C15H20N4O3/c1-4-18(5-2)12-7-6-11(9-13(12)19(21)22)15-10(3)8-14(20)16-17-15/h6-7,9-10H,4-5,8H2,1-3H3,(H,16,20)
Chemical Name
3-[4-(diethylamino)-3-nitrophenyl]-4-methyl-4,5-dihydro-1H-pyridazin-6-one
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~50 mg/mL (~164.29 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (8.21 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.2858 mL 16.4290 mL 32.8580 mL
5 mM 0.6572 mL 3.2858 mL 6.5716 mL
10 mM 0.3286 mL 1.6429 mL 3.2858 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Figure 1. Identification and characterization of DNMDP, a potent and selective cancer cell cytotoxic agent.(a) Scatterplot of 1924 compounds shows mean survival of TP53 mutant NCI-H1734 cells and TP53 wild-type A549 cells after 48 hours of treatment at concentrations of 10 µM. DNMDP is indicated in red with an arrow. Other compounds that selectively killed NCI-H1734 cells are indicated in green with a small arrow. Positive control staurosporine is labeled in blue. (b) A panel of cell lines was treated with the indicated concentrations of DNMDP for 48 hours. Data represent mean values of 8 replicates ± s.d. (c) The HeLa cell line was treated with indicated concentrations of the separated enantiomers of DNMDP for 48 hours. The (R)-enantiomer had a 500-fold lower EC50 compared to the (S)-enantiomer. Data represent mean values of 8 replicates ± s.d (d) Structure of (R)-DNMDP.[1].Identification of cancer-cytotoxic modulators of PDE3A by predictive chemogenomics. Nat Chem Biol. 2016 Feb;12(2):102-8.
  • Figure 2. PDE3A expression correlates with sensitivity to DNMDP, but inhibition of PDE3A mediated cAMP hydrolysis does not correlate with cytotoxicity.(a) Correlation between DNMDP sensitivity and expression of 18,988 genes in 766 genomically characterized cell lines. Cell lines were treated for 72 hours with concentrations ranging from 66.4 µM – 2 nM in 2-fold step dilutions. The Z-score for Pearson correlation between PDE3A expression and sensitivity to DNMDP is 8.5. (b) Cell lines from panel A were treated with 480 compounds. DNMDP shows the best correlation between PDE3A expression and sensitivity. (c) Published PDE3 inhibitor IC50 values and EC50 values of HeLa treated with indicated compounds up to 10 µM for 48 hours23,27,48,49. DNMDP IC50 concentration for PDE3A inhibition was determined in Supplementary Fig. 5b.[1].Identification of cancer-cytotoxic modulators of PDE3A by predictive chemogenomics. Nat Chem Biol. 2016 Feb;12(2):102-8.
  • Figure 3. Non-lethal PDE3 inhibitors rescue cell death induced by DNMDP by competing for the binding of PDE3A.(a) HeLa cells were treated with 1600 bioactive compounds at a concentration of 20 µM in combination with 30 nM (EC70) of DNMDP for 48 hours. The viability was calculated as a percentage of the untreated DMSO control. (b) HeLa cells were treated with DNMDP in combination with indicated concentrations of non-lethal PDE3 and pan-PDE inhibitors for 48 hours. Data represent values of single data points. (c) Affinity purification performed on 200 µg of HeLa cell lysate using a DNMDP linker-analogue tethered to a solid phase with the same rescue characteristic as non-lethal PDE3 inhibitors. Indicated compounds were co-incubated with the linker-analogue. The affinity purified fraction was run on an SDS-PAGE gel and probed for PDE3A.[1].Identification of cancer-cytotoxic modulators of PDE3A by predictive chemogenomics. Nat Chem Biol. 2016 Feb;12(2):102-8.
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