Size | Price | Stock | Qty |
---|---|---|---|
50mg |
|
||
100mg |
|
||
250mg |
|
||
500mg |
|
||
Other Sizes |
|
Purity: ≥98%
GNE-781 (GNE781) is a novel, highly potent and selective inhibitor of CBP (Cyclic Adenosine Monophosphate Response Element Binding Protein, Binding Protein) with immunomodulatory and anticancer effects. It inhibits CBP with an IC50 of 0.94 nM in TR-FRET assay. GNE-781 also inhibits BRET and BRD4(1) with IC50s of 6.2 nM and 5100 nM, respectively. GNE-781 showed TR-FRET IC50 = 0.94 nM, BRET IC50 = 6.2 nM, BRD4(1) IC50 = 5,100 nΜ) that maintained good in vivo PK properties in multiple species. GNE-781 displays anti-tumor activity in an AML tumor model and was also shown to decrease Foxp3 transcript levels in a dose dependent manner.
Targets |
|
|
---|---|---|
ln Vitro |
GNE-781 is a highly developed, strong, and specific bromodomain inhibitor of the CBP (cyclic adenosine monophosphate response element-binding protein). The transcript levels of FOXP3 (forkhead box P3) are decreased by GNE-781. Analysis of a subset of bromodomains revealed that GNE-781 has significant selectivity for both CBP (5425-fold) and P300 (4250-fold), and is very selective for CBP/P300. GNE-781 exhibits cellular potency and selectivity in the ideal ratio—5425 times higher than BRD4 (1)—[1].
|
|
ln Vivo |
In mice bearing MOLM-16 AML xenografts, GNE-781 (3-30 mg/kg; po; twice daily for 21 days) suppresses tumor growth inhibition (%TGI) at doses of 3, 10, and 30 mg/kg 73%, 71%, and 89%, respectively [1]. Foxp3 transcript levels are lowered in a dose-dependent manner by GNE-781. At doses as low as 3 mg/kg, GNE-781 (3-30 mg/kg) inhibits MYC at 2 and 8 hours; at 10 and 30 mg/kg, the greatest inhibition (87% and 88% inhibition) is reached at 2 hours [1].
|
|
Enzyme Assay |
Time-Resolved Fluorescence Resonance Energy Transfer Assays[1]
Compound potencies were evaluated in a panel of biochemical bromodomain binding assays. Binding of biotinylated small-molecule ligands to recombinant His-tagged bromodomains was assessed by time-resolved fluorescence resonance energy transfer (TR-FRET). Test compounds that compete with the biotinylated ligand for bromodomain binding reduce the TR-FRET signal. All biochemical assay protocols were carried out as previously described. Cellular Assay Protocols[1] The CBP BRET assay was carried out as previously described. To determine the inhibition of MYC expression, MV-4-11 cells (ATCC) were plated at 10000 cells per well in 96-well plates in RPMI1640 media supplemented with 10% fetal bovine serum and 2 mM l-glutamine. Test compounds diluted in DMSO were transferred to the cell plates, keeping final DMSO concentration consistent at 0.1%, and incubated for 4 h at 37 °C. Lysis and analysis for MYC expression were carried out using QuantiGene 2.0 reagents and following the vendor’s instructions. Luminescence was read using an EnVision plate reader and EC50s generated in XLFit using a four-parameter nonlinear regression fit. |
|
Cell Assay |
In Vitro Evaluation of 19 (GNE-781) on Tregs[1]
Human naïve CD4+T cells were isolated from PBMCs of healthy donors using naïve CD4+T Cell Isolation Kit II and differentiated to iTregs for 4 days using plate-bound anti-CD3 (5 μg/mL), soluble anti-CD28 (3 μg/mL), plus rTGFβ (5 ng/mL), and rIL-2 (10 ng/mL) in complete RPMI-1640 medium (10% FCS, 50 μM 2-mercaptoethanol, 10% penicillin/streptomycin, 10% NEAA, 10% sodium pyruvate). Compound 19 was used at 2 μM and titrated down at 2× dilution. iTregs were stained using antibodies against surface markers CD4 FITC (clone OKT-4) and CD25 Pacific Blue (clone BC96), fixed/permeabilized with the Foxp3/Transcription Factor Staining Buffer Set, and labeled for intracellular Foxp3 APC (clone 259D/C7). iTregs were stained for viability using fixable viability dye efluor 781. Samples were acquired on a BD LSR Fortessa using FACSDiva software. Data were analyzed using the FlowJo software. Total RNA was isolated from iTregs using RNeasy, including an on-column DNase I digestion. cDNA was prepared using High Capacity cDNA Reverse Transcriptase Kit. Quantitative RT-PCR was performed to determine Foxp3 gene expression levels with the ABI 7900 HT Fast Real-Time PCR System. Gene expression data was normalized to B2M as a housekeeping gene. |
|
Animal Protocol |
Mice[1] [1]
Twelve female CD-1 mice are used. All animals are 6-9 weeks old at the time of study and weighed between 20 and 35 g. Animals (n=3 per dosing route) are dosed with 10 or GNE-781 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water are available ad libitum to all animals. Serial blood samples (15 μL) are collected by tail nick at 0.033, 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the intravenous administration and 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the oral administration. All blood samples are diluted with 60 μL of water containing 1.7 mg/mL EDTA and kept at -80 °C until analysis[1]. Rats[1] Twelve male Sprague-Dawley rats are used. All animals are 6-9 weeks old at the time of study and weighed between 200 and 300 g. Animals (n=3 per dosing route) are dosed with 10 or GNE-781 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water are available ad libitum to animals in the iv groups. Animals in po groups are fasted overnight and food withheld until 4 h postdose. Approximately 250 μL of blood are collected via the catheter at 0.033, 0.083, 0.25, 0.5, 1, 2, 4, 8, and 24 h after the intravenous or oral administration. All blood samples are collected into tubes containing 5 μL of 0.5 M K2EDTA and processed for plasma. Samples are centrifuged (2500g for 15 min at 4°C) within 1 h of collection, and plasma samples are kept at -80 °C until analysis[1]. In Vivo PK of 10 and 19 (GNE-781)[1] Mouse PK: Twelve female CD-1 mice were used. All animals were 6–9 weeks old at the time of study and weighed between 20 and 35 g. Animals (n = 3 per dosing route) were dosed with 10 or 19 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water were available ad libitum to all animals. Serial blood samples (15 μL) were collected by tail nick at 0.033, 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the intravenous administration and 0.083, 0.25, 0.5, 1, 3, 8, and 24 h after the oral administration. All blood samples were diluted with 60 μL of water containing 1.7 mg/mL EDTA and kept at −80 °C until analysis. Rat PK: [1] Twelve male Sprague–Dawley rats were used. All animals were 6–9 weeks old at the time of study and weighed between 200 and 300 g. Animals (n = 3 per dosing route) were dosed with 10 or 19 at 1 mg/kg iv (in propyl ethylene glycol 400 (35% v/v) and water (65% v/v)) or 5 mg/kg po (suspended in 0.5% w/v methylcellulose, 0.2% w/v Tween 80). Food and water were available ad libitum to animals in the iv groups. Animals in po groups were fasted overnight and food withheld until 4 h postdose. Approximately 250 μL of blood were collected via the catheter at 0.033, 0.083, 0.25, 0.5, 1, 2, 4, 8, and 24 h after the intravenous or oral administration. All blood samples were collected into tubes containing 5 μL of 0.5 M K2EDTA and processed for plasma. Samples were centrifuged (2500g for 15 min at 4 °C) within 1 h of collection, and plasma samples were kept at −80 °C until analysis. View More
Dog PK: [1] |
|
References | ||
Additional Infomation |
Inhibition of the bromodomain of the transcriptional regulator CBP/P300 is an especially interesting new therapeutic approach in oncology. Researchers recently disclosed in vivo chemical tool 1 (GNE-272) for the bromodomain of CBP that was moderately potent and selective over BRD4(1). In pursuit of a more potent and selective CBP inhibitor, we used structure-based design. Constraining the aniline of 1 into a tetrahydroquinoline motif maintained potency and increased selectivity 2-fold. Structure-activity relationship studies coupled with further structure-based design targeting the LPF shelf, BC loop, and KAc regions allowed us to significantly increase potency and selectivity, resulting in the identification of non-CNS penetrant 19 (GNE-781, TR-FRET IC50 = 0.94 nM, BRET IC50 = 6.2 nM; BRD4(1) IC50 = 5100 nΜ) that maintained good in vivo PK properties in multiple species. Compound 19 displays antitumor activity in an AML tumor model and was also shown to decrease Foxp3 transcript levels in a dose dependent manner.[1]
Researchers have identified a highly potent and selective in vivo probe (19,GNE-781) of the CBP bromodomain that is suitable to interrogate the biology of CBP without the complication of BET inhibition. Our studies began with recently disclosed 1 (TR-FRET IC50 = 20 nM, BRET IC50 = 410 nM, BRD4 IC50 = 13,000 nΜ) that was moderately potent for the bromodomain of CBP and 650-fold selective over BRD4. Constraining the aniline of 1 into tetrahydroquinoline 3 maintained potency and increased selectivity by 2-fold over 1. Structure–activity relationship studies coupled with structure-based design targeting the LPF shelf, BC loop, and KAc regions allowed us to identify 10 (TR-FRET IC50 = 1.1 nM, BRET IC50 = 12 nM, BRD4 IC50 = 4200 nΜ). Further profiling of this compound revealed that it penetrated into the CNS, resulting in adverse CNS effects. Subsequent optimization focused on increasing tPSA with the addition of a hydrogen bond donor. This was accomplished with conversion of the Asn-binding acetamide of 10 to a methyl urea, enabling identification of non-CNS penetrant 19 (TR-FRET IC50 = 0.94 nM, BRET IC50 = 6.2 nM, BRD4(1) IC50 = 5100 nΜ) that demonstrated an appropriate balance of cell potency, selectivity (5425-fold over BRD4), and in vivo PK. The exquisite potency and selectivity of 19 enables the clear delineation of pharmacological effects from the inhibition of CBP over the BET bromodomains. In vivo, 19 modulates MYC expression that corresponds with antitumor activity in an AML tumor model. Additional in vitro studies with 19 showed that this compound impaired FOXP3 expression and Treg function, further suggesting CBP bromodomain inhibition as a novel small molecule approach for cancer immunotherapy.[1] |
Molecular Formula |
C27H33F2N7O2
|
---|---|
Molecular Weight |
525.593432188034
|
Exact Mass |
525.27
|
Elemental Analysis |
C, 61.70; H, 6.33; F, 7.23; N, 18.65; O, 6.09
|
CAS # |
1936422-33-1
|
PubChem CID |
132275066
|
Appearance |
Light yellow to yellow solid powder
|
LogP |
2.7
|
Hydrogen Bond Donor Count |
1
|
Hydrogen Bond Acceptor Count |
7
|
Rotatable Bond Count |
4
|
Heavy Atom Count |
38
|
Complexity |
833
|
Defined Atom Stereocenter Count |
0
|
InChi Key |
CQCWHSDMJBAGDC-UHFFFAOYSA-N
|
InChi Code |
InChI=1S/C27H33F2N7O2/c1-30-27(37)34-9-5-23-22(16-34)26(32-36(23)19-6-10-38-11-7-19)35-8-3-4-17-12-20(18-14-31-33(2)15-18)21(25(28)29)13-24(17)35/h12-15,19,25H,3-11,16H2,1-2H3,(H,30,37)
|
Chemical Name |
3-[7-(difluoromethyl)-6-(1-methylpyrazol-4-yl)-3,4-dihydro-2H-quinolin-1-yl]-N-methyl-1-tetrahydropyran-4-yl-6,7-dihydro-4H-pyrazolo[4,3-c]pyridine-5-carboxamide
|
Synonyms |
GNE781; GNE 781; 3-(7-(Difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl)-N-methyl-1-(tetrahydro-2H-pyran-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide; CHEMBL4097025; 3-[7-(difluoromethyl)-6-(1-methyl-1H-pyrazol-4-yl)-3,4-dihydroquinolin-1(2H)-yl]-N-methyl-1-(oxan-4-yl)-1,4,6,7-tetrahydro-5H-pyrazolo[4,3-c]pyridine-5-carboxamide; GNE-781.
|
HS Tariff Code |
2934.99.03.00
|
Storage |
Powder -20°C 3 years 4°C 2 years In solvent -80°C 6 months -20°C 1 month Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture. |
Shipping Condition |
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
|
Solubility (In Vitro) |
DMSO : ~100 mg/mL (~190.26 mM)
|
---|---|
Solubility (In Vivo) |
Solubility in Formulation 1: ≥ 2.87 mg/mL (5.46 mM) (saturation unknown) in 5% DMSO + 40% PEG300 + 5% Tween80 + 50% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution. Solubility in Formulation 2: 2.87 mg/mL (5.46 mM) in 5% DMSO + 95% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), suspension solution; with ultrasonication. Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution. View More
Solubility in Formulation 3: ≥ 1.67 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution. Solubility in Formulation 4: ≥ 1.67 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution. For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly. Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution. Solubility in Formulation 5: ≥ 1.67 mg/mL (3.18 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution. For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly. |
Preparing Stock Solutions | 1 mg | 5 mg | 10 mg | |
1 mM | 1.9026 mL | 9.5131 mL | 19.0262 mL | |
5 mM | 0.3805 mL | 1.9026 mL | 3.8052 mL | |
10 mM | 0.1903 mL | 0.9513 mL | 1.9026 mL |
*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.
Calculation results
Working concentration: mg/mL;
Method for preparing DMSO stock solution: mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.
Method for preparing in vivo formulation::Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.
(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
(2) Be sure to add the solvent(s) in order.