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Hoechst 33258

Alias: Pibenzimol; HOECHST 33258; Bisbenzimidazole; 23491-44-3; Hoe-33258; CHEBI:52082; LHQ7J5KV9B; 4-(5-(4-Methyl-1-piperazinyl)(2,5'-bi-1H-benzimidazol)-2'-yl)phenol;
Cat No.:V31318 Purity: ≥98%
Hoechst 33258 is a marking dye from the Hoechst range.
Hoechst 33258
Hoechst 33258 Chemical Structure CAS No.: 23491-44-3
Product category: New2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
50mg
100mg
Other Sizes

Other Forms of Hoechst 33258:

  • Bisbenzimide HCl (Pibenzimol, Hoechst 33258)
  • Hoechst 33258 analog 6
  • Hoechst 33258 analog 2
  • Hoechst 33258 analog 5
  • Hoechst 33258 analog
  • Hoechst 33258 analog 3
Official Supplier of:
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Top Publications Citing lnvivochem Products
Product Description
Hoechst 33258 is a marking dye from the Hoechst range. The Hoechst series are live cell nuclear labeling dyes. Hoechst binds nucleic acids by binding to the minor groove in the DNA double strand. Hoechst prefers to bind to A/T-rich DNA strands. At the same time, A/T-rich double-stranded DNA significantly enhances the fluorescence intensity. Hoechst can cross cell membranes and bind to living or fixed cells. The fluorescence intensity of Hoechst dye increases with increasing solution pH.
Biological Activity I Assay Protocols (From Reference)
Targets
IC50 = 51 μM (HeLa cells), 32 μM (HL60 cells), and 15 μM (U937 cells)
ln Vitro
Preparation of Hoechst working slution:
1.1 Preparation of stock solution
Prepare 1 mg/mL Hoechst stock solution with DMSO.
Note: Hoechst stock solution is recommended to be aliquoted and stored in the dark at -4 ℃ or -20 ℃.
1.2 Preparation of working slution
Dilute the stock solution with preheated serum-free cell culture medium or PBS to a final concentration of 10 μ g/mL Hoechst working solution.
Note: Please adjust the concentration of Hoechst working solution according to your specific needs, and use freshly prepared solutions.
2. Cell staining (suspended cells)
2.1 Centrifuge and collect cells, wash twice with PBS for 5 minutes each time. Cell density is 1 × 10~6/mL
2.2 Add 1 mL of Hoechst working solution and incubate at room temperature for 3-10 minutes.
2.3 400 g, centrifuge for 3-4 minutes, discard the supernatant.
2.4 Wash the cells twice with PBS, each time for 5 minutes.
After resuspending cells in 1 mL serum-free medium or PBS, observe them using a fluorescence microscope or flow cytometer.
3. Cell staining (adherent cells)
3.1 Cultivate adherent cells on sterile coverslips.
3.2 Remove the cover glass from the culture medium and aspirate excess culture medium.
3.3 Add 100 μ L of dye working solution, gently shake to completely cover the cells, and incubate for 3-10 minutes.
3.4 Remove the dye working solution, wash 2-3 times with culture medium for 5 minutes each time, and observe using a fluorescence microscope or flow cytometer.
Enzyme Assay
Pibenzimol/Hoechst 33258 is a fluorescent dye of benzimidazole derivative. Pibenzimol binds to AT-specific sites in the minor groove of duplex DNA and inhibits topoisomerase I, and DNA polymerase, thereby preventing DNA replication. This agent prolongs the G2 phase of the cell cycle and initiates apoptosis in tumor cells.
A benzimidazole antifilarial agent; it is fluorescent when it binds to certain nucleotides in DNA, thus providing a tool for the study of DNA replication; it also interferes with mitosis.
Cell Assay
Staining examples:
Example 1: Hoechst 33258 may be utilized for the detection of nuclei.
Method: For cell staining.
1. Fix, penetrate and seal cells first.
2. Incubate cells with Hoechst 33258 (1:1000; 30 min; dark).
3. Wash cells with PBS for five times and use a fluorescence microscope for image.
Example 2: Hoechst 33258 may be utilized for the detection of nuclei and staining nuclei of live and dead cells (apoptotic/necrotic).
Method: For cell staining.
1. Incubate cultured cells with 1 mL of the solution prepared with Hoechst 33258 (7.5 μg/mL; 37℃; 5% CO2; 30 min; 1×PBS).
2. Use a Evos FLc Fluorescent Inverted Microscope for image.
Example 3: Hoechst 33258 may be utilized for the detection of nuclei, as well as in apoptosis detection assays.
Method: For cell staining.
1. Fix cells in paraformaldehyde after transfection and wash cells with PBS.
2. Stain cells with Hoechst 33258 (30 min; 20℃; dark).
3. Use a fluorescence microscope for image.
ADME/Pharmacokinetics
Rat(iv): LD50: 32200 µg/kg
Mouse(iv): LD50: 36900 µg/kg
Toxicity/Toxicokinetics
Toxicity Data
Rat(iv): LD50: 32200 µg/kg
Mouse(iv): LD50: 36900 µg/kg
References

[1]. Newly synthesized bis-benzimidazole derivatives exerting anti-tumor activity through inductionof apoptosis and autophagy. Bioorg Med Chem Lett. 2012 Oct 1;22(19):6297-300.

[2]. Synthesis, DNA/RNA affinity and antitumour activity of new aromatic diamidines linked by 3,4-ethylenedioxythiophene. Eur J Med Chem. 2011 Feb;46(2):743-55.

Additional Infomation
Pibenzimol is a bibenzimidazole and a N-methylpiperazine. It has a role as a fluorochrome and an anthelminthic drug.
Pibenzimol is a fluorescent dye of benzimidazole derivative. Pibenzimol binds to AT-specific sites in the minor groove of duplex DNA and inhibits topoisomerase I, and DNA polymerase, thereby preventing DNA replication. This agent prolongs the G2 phase of the cell cycle and initiates apoptosis in tumor cells. (NCI04)
A benzimidazole antifilarial agent; it is fluorescent when it binds to certain nucleotides in DNA, thus providing a tool for the study of DNA replication; it also interferes with mitosis.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C25H22N6O
Molecular Weight
422.481784343719
Exact Mass
424.201
Elemental Analysis
C, 70.73; H, 5.70; N, 19.80; O, 3.77
CAS #
23491-44-3
Related CAS #
Hoechst 33258 trihydrochloride;23491-45-4;Hoechst 33258 analog;258843-62-8;Hoechst 33258 analog 2;23491-54-5;Hoechst 33258 analog 3;23554-98-5;Hoechst 33258 analog 5;23491-55-6;Hoechst 33258 analog 6;129244-66-2
PubChem CID
2392
Appearance
Light yellow to yellow solid powder
Density
1.337 g/cm3
Boiling Point
643.1ºC at 760 mmHg
Melting Point
314ºC
Flash Point
342.7ºC
Vapour Pressure
0mmHg at 25°C
Index of Refraction
1.742
LogP
4.233
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
3
Heavy Atom Count
32
Complexity
634
Defined Atom Stereocenter Count
0
InChi Key
INAAIJLSXJJHOZ-UHFFFAOYSA-N
InChi Code
InChI=1S/C25H24N6O/c1-30-10-12-31(13-11-30)18-5-9-21-23(15-18)29-25(27-21)17-4-8-20-22(14-17)28-24(26-20)16-2-6-19(32)7-3-16/h2-9,14-15,32H,10-13H2,1H3,(H,26,28)(H,27,29)
Chemical Name
4-[6-[6-(4-methylpiperazin-1-yl)-1H-benzimidazol-2-yl]-1H-benzimidazol-2-yl]phenol
Synonyms
Pibenzimol; HOECHST 33258; Bisbenzimidazole; 23491-44-3; Hoe-33258; CHEBI:52082; LHQ7J5KV9B; 4-(5-(4-Methyl-1-piperazinyl)(2,5'-bi-1H-benzimidazol)-2'-yl)phenol;
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: This product requires protection from light (avoid light exposure) during transportation and storage.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~41.67 mg/mL (~98.16 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (4.90 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (4.90 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.3670 mL 11.8349 mL 23.6698 mL
5 mM 0.4734 mL 2.3670 mL 4.7340 mL
10 mM 0.2367 mL 1.1835 mL 2.3670 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

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