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K-Ras-IN-1

Alias: K-Ras-IN-1; K-Ras-IN1; K-Ras-IN 1; K-Ras Inhibitor-1; K-Ras Inhibitor 1
Cat No.:V2944 Purity: ≥98%
K-Ras-IN-1 (formerly known as K-Ras-Inhibitor-1) is a novel small molecule K-Ras inhibitor that binds to K-Ras in a hydrophobic pocket that is occupied by Tyr-71 in the apo-Ras crystal structure, in other words, K-Ras-IN-1 binds directly to K-Ras between switch I and switch II and inhibit Sos-catalyzed K-Ras activation.
K-Ras-IN-1
K-Ras-IN-1 Chemical Structure CAS No.: 84783-01-7
Product category: Ras
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

K-Ras-IN-1 (formerly known as K-Ras-Inhibitor-1) is a novel small molecule K-Ras inhibitor that binds to K-Ras in a hydrophobic pocket that is occupied by Tyr-71 in the apo-Ras crystal structure, in other words, K-Ras-IN-1 binds directly to K-Ras between switch I and switch II and inhibit Sos-catalyzed K-Ras activation. It inhibits Sos-mediated nucleotide exchange by attaching to K-Ras and preventing Sos from binding. K-Ras-IN-1 serves as a platform for acquiring probe molecules that are helpful in clarifying novel understandings of Ras signaling and in identifying K-Ras inhibitors for the management of cancer.

Biological Activity I Assay Protocols (From Reference)
Targets
K-Ras
ln Vitro

In vitro activity: K-Ras-IN-1 is a brand-new small molecule K-Ras inhibitor that attaches itself to K-Ras in a hydrophobic pocket in the apo-Ras crystal structure that Tyr-71 occupies. To put it another way, K-Ras-IN-1 attaches itself to K-Ras directly between switch I and switch II, blocking Sos-catalyzed K-Ras activation. It inhibits Sos-mediated nucleotide exchange by attaching to K-Ras and preventing Sos from binding. K-Ras-IN-1 serves as a platform for acquiring probe molecules that are helpful in clarifying novel understandings of Ras signaling and in identifying K-Ras inhibitors for the management of cancer.

ln Vivo

Enzyme Assay
Compounds that blocked Sos-mediated nucleotide exchange were tested for their ability to investigate the functional effects of binding to K-Ras. In this experiment, BODIPY-GTP is swapped for unlabeled GDP, which is catalyzed by Sos and causes a rise in fluorescence.
Animal Protocol


References

[1]. J Chem Inf Model . 2014 Feb 24;54(2):530-8.

[2]. Angew Chem Int Ed Engl . 2012 Jun 18;51(25):6140-3.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C11H13NOS
Molecular Weight
207.29
Exact Mass
207.071
Elemental Analysis
C, 63.74; H, 6.32; N, 6.76; O, 7.72; S, 15.47
CAS #
84783-01-7
Related CAS #
84783-01-7
PubChem CID
551134
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
332.1±44.0 °C at 760 mmHg
Flash Point
154.7±28.4 °C
Vapour Pressure
0.0±0.7 mmHg at 25°C
Index of Refraction
1.668
LogP
2.06
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
2
Rotatable Bond Count
1
Heavy Atom Count
14
Complexity
213
Defined Atom Stereocenter Count
0
SMILES
S=C(N1CCCC1)C1C(O)=CC=CC=1
InChi Key
QIKLOVZAPGSYNO-UHFFFAOYSA-N
InChi Code
InChI=1S/C11H13NOS/c13-10-6-2-1-5-9(10)11(14)12-7-3-4-8-12/h1-2,5-6,13H,3-4,7-8H2
Chemical Name
(2-hydroxyphenyl)-pyrrolidin-1-ylmethanethione
Synonyms
K-Ras-IN-1; K-Ras-IN1; K-Ras-IN 1; K-Ras Inhibitor-1; K-Ras Inhibitor 1
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 28 mg/mL
Water: <1 mg/mL
Ethanol: <1 mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (12.06 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (12.06 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (12.06 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 4.8242 mL 24.1208 mL 48.2416 mL
5 mM 0.9648 mL 4.8242 mL 9.6483 mL
10 mM 0.4824 mL 2.4121 mL 4.8242 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • K-Ras-IN-1

    Ribbon and molecular surface representations of the X-ray co-crystal structures of GDP-K-Ras complexed to: a)4(PDB code 4EPV), b)5(PDB code 4EPW), c)2(PDB code 4EPT) and d)6(PDB code 4EPX).2012 Jun 18;51(25):6140-3.

  • K-Ras-IN-1

    Electrostatic surface representations of GDP-K-Ras a) in the absence of a ligand (PDB code 4EPR) and b) in the “open” form showing the primary hydrophobic binding pocket and the adjacent electronegative cleft. c) Schematic representation of the transition of GDP-K-Ras from the “closed” form (green) to the “open” form (cyan).2012 Jun 18;51(25):6140-3.

  • K-Ras-IN-1

    a) Ribbon and molecular surface representations of GDP-bound K-Ras complexed to13(PDB code 4EPY). b) K-Ras/13X-ray structure overlaid with a previously reportedRas-Sos complex crystal structure (PDB code 1BKD).

    2012 Jun 18;51(25):6140-3.

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