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ML130 (Nodinitib-1)

Alias: Nodinitib-1; ML130; ML 130; CID1088438; ML-130; CID-1088438; CID 1088438; Nodinitib 1; Nodinitib1
Cat No.:V0747 Purity: ≥98%
ML130 (also known as Nodinitib-1; ML-130; CID1088438; CID-1088438)is a novel, potent and selective inhibitor of NOD1 (nucleotide-binding oligomerization domain containing 1) with potential anti-inflammatory activity.
ML130 (Nodinitib-1)
ML130 (Nodinitib-1) Chemical Structure CAS No.: 799264-47-4
Product category: NOD1
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

ML130 (also known as Nodinitib-1; ML-130; CID1088438; CID-1088438) is a novel, potent and selective inhibitor of NOD1 (nucleotide-binding oligomerization domain containing 1) with potential anti-inflammatory activity. With an IC50 of 0.56 μM, it blocks NOD1. It works by preventing the NF-κB from activating and has a 36-fold preference for NOD1 over NOD2. Without affecting viability, ML130 selectively inhibits NOD1-dependent activation of NF-κB and MAPK signaling in addition to blocking NOD1-induced IL-8 production in MCF-7 cells. 15 μM noditinib-1 inhibited expression of IL-1β, IL-6, and TNF-α in ex vivo dendritic cell culture while decreasing the expression of CD83, CD86, and HLA-DR.

Biological Activity I Assay Protocols (From Reference)
Targets
NOD1 (IC50 = 0.56 μM)
ln Vitro
ML130 has been chosen as a candidate probe because it selectively inhibited NOD1-induced NF-B activation in HEK293 cells without causing cytotoxicity. By selectively inhibiting both the NOD1-dependent pathway to IL-8 secretion and the NOD1-dependent pathway to NF-κB activation, ML130 is also confirmed in secondary assays. [1] Another study found that ML130 alters NOD1 subcellular targeting in cells and causes conformational changes in NOD1 in vitro. This finding offers chemical probes for probing the mechanisms governing NOD1 activity as well as tools for examining the functions of NOD1 in a variety of infectious and inflammatory diseases. [2]
ln Vivo

Enzyme Assay
On Day 1, conduct 1) Collect HEK-293-T NFKB-Luc when it is 100% confluent. 2) Use Multidrop to add NOD assay media. 3) Spin down the plates in the centrifuge for one minute at 1000 rpm. 4) Diluting a compound repeatedly. 5) Add 0.75 ug/mL of gamma-tri-DAP to the cell suspension. 6) Seed HEK-293-T NFKB-Luc plates with 13000 cells per well and 4 uL per well to fill the plate. 7) On a centrifuge, spin plates at 500 RPM for five minutes. 8) Plates with lids. Sandwich two 384-plate containers filled with water with 2 lidded plates to hold 4 plates. 9) Securely cover plates with one layer of plastic wrap. 10) Keep the incubator at 37 °C and 5% CO2 for the duration of the night (14 hours). Procedure for Day 2 1) Use Multidrop to add 3 ul of SteadyGlo solution to each well. 2) Shake plates in a plate shaker for 20 minutes. 3) Use a centrifuge to spin plates at 1000 RPM for 1 minute. 4. Read luminescence. GraphPad Prism 5.0 is used to compute IC50 values. Z average
Cell Assay
Using immortalized human hepatocytes Fa2N-4, the ATP-lite 1-step assay is used to assess the hepatic toxicity of various substances. 50,000 Fa2N-4 cells are seeded in each well, and they are then incubated for 24 hours at 37 °C with 5% CO2 with a range of concentrations of the test substance (0.01 µM-50 µM) in MFE support medium. Luciferase and D-luciferin are added at the end of the experiment. The Infinite M200 plate reader records the emitted luminescent signal that results from the reaction with cellular ATP. Using non-linear regression analysis and a log (inhibitor) vs response equation with a variable slope, the Prism4 statistical software program is used to determine the concentration of each compound that killed 50% of the cells (LC50).
Animal Protocol


References

[1]. ACS Med Chem Lett . 2011 Oct 13;2(10):780-785.

[2]. Chem Biol . 2011 Jul 29;18(7):825-32.

Additional Infomation
1-(4-methylphenyl)sulfonyl-2-benzimidazolamine is a sulfonamide.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C14H13N3O2S
Molecular Weight
287.34
Exact Mass
287.072
Elemental Analysis
C, 58.52; H, 4.56; N, 14.62; O, 11.14; S, 11.16
CAS #
799264-47-4
Related CAS #
799264-47-4
PubChem CID
1088438
Appearance
White to off-white solid powder
Density
1.4±0.1 g/cm3
Boiling Point
532.5±43.0 °C at 760 mmHg
Flash Point
275.8±28.2 °C
Vapour Pressure
0.0±1.4 mmHg at 25°C
Index of Refraction
1.688
LogP
2.79
Hydrogen Bond Donor Count
1
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
2
Heavy Atom Count
20
Complexity
440
Defined Atom Stereocenter Count
0
SMILES
O=S(N1C2C(=CC=CC=2)N=C1N)(C1C=CC(C)=CC=1)=O
InChi Key
SRFABRWQVPCPRG-UHFFFAOYSA-N
InChi Code
InChI=1S/C14H13N3O2S/c1-10-6-8-11(9-7-10)20(18,19)17-13-5-3-2-4-12(13)16-14(17)15/h2-9H,1H3,(H2,15,16)
Chemical Name
1-(4-methylphenyl)sulfonylbenzimidazol-2-amine
Synonyms
Nodinitib-1; ML130; ML 130; CID1088438; ML-130; CID-1088438; CID 1088438; Nodinitib 1; Nodinitib1
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~57 mg/mL (~198.4 mM)
Water: <1 mg/mL
Ethanol: ~2 mg/mL (~7.0 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (8.70 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.4802 mL 17.4010 mL 34.8020 mL
5 mM 0.6960 mL 3.4802 mL 6.9604 mL
10 mM 0.3480 mL 1.7401 mL 3.4802 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
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Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • ML130 (Nodinitib-1)

    Profiling 2-aminobenzimidazole (ML130)derivatives for pathway selectivity.Chem Biol.2011 Jul 29;18(7):825-32.
  • ML130 (Nodinitib-1)

    CID-1088438 (ML130analog)specifically inhibits NOD1-dependent signaling pathways.Chem Biol.2011 Jul 29;18(7):825-32.
  • ML130 (Nodinitib-1)

    Analysis of mechanisms of chemical inhibitors of NOD1.Chem Biol.2011 Jul 29;18(7):825-32.
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