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Natamycin

Cat No.:V12114 Purity: ≥98%
Natamycin (Pimaricin) is a macrolide antibiotic generated by several Streptomyces strains that can inhibit fungal growth by inhibiting the transport of amino acid (AA)s and glucose across the plasma membrane.
Natamycin
Natamycin Chemical Structure CAS No.: 7681-93-8
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
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50mg
100mg
500mg
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Product Description
Natamycin (Pimaricin) is a macrolide antibiotic generated by several Streptomyces strains that can inhibit fungal growth by inhibiting the transport of amino acid (AA)s and glucose across the plasma membrane. Natamycin (Pimaricin) is a food preservative and antifungal compound/agent in agriculture and is widely utilized in study/research of fungal keratitis.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
Natamycin is a macrolide antibiotic that is effective against S. natalensis, S. gilvosporeus, S. lydicus, and S. chattanoogensis. It inhibits fungal growth by inhibiting regulation and maybe transport across the plasma membrane. Natamycin is widely utilized in the food sector and as a medicine for topical applications. Natamycin's mechanism of action differs from those of other polyene antibiotics in that it does not rely on ergotol to permeabilize the plasma membrane. The abrupt stop of yeast growth after natamycin treatment suggests that natamycin has a transitory action, most likely at the plasma membrane level [1][2].
ADME/Pharmacokinetics
Absorption, Distribution and Excretion
Systemic absorption should not be expected following topical administration, and as with other polyene antibiotics, absorption from the gastrointestinal tract is very poor.
References

[1]. SlnM gene overexpression with different promoters on natamycin production in Streptomyces lydicus A02. J Ind Microbiol Biotechnol. 2014 Jan;41(1):163-72.

[2]. Polyene antibiotic that inhibits membrane transport proteins. Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11156-9.

Additional Infomation
Natamycin is a Polyene Antimicrobial.
Natamycin has been reported in Streptomyces gilvosporeus, Streptomyces, and other organisms with data available.
Natamycin is a polyene amphoteric macrolide antibiotic with antifungal properties. Natamycin exerts its antifungal effects by binding to sterols in the fungal cell membrane thereby increasing membrane permeability. This leads to a leakage and loss of essential cellular constituents. Following ocular application, natamycin is retained in the conjunctival fornices and attains effective concentrations within the corneal stroma where it exerts its effect.
Amphoteric macrolide antifungal antibiotic from Streptomyces natalensis or S. chattanoogensis. It is used for a variety of fungal infections, mainly topically.
Drug Indication
For the treatment of fungal blepharitis, conjunctivitis, and keratitis caused by susceptible organisms including Fusarium solani keratitis.
Mechanism of Action
Like other polyene antibiotics, Natamycin inhibits fungal growth by binding to sterols. Specifically, Natamycin binds to ergosterol in the plasma membrane, preventing ergosterol-dependent fusion of vacuoles, as well as membrane fusion and fission. This differs from the mechanism of most other polyene antibiotics, which tend to work by altering fungal membrane permeability instead.
Pharmacodynamics
Natamycin is an antifungal drug for topical ophthalmic administration. It is a tetraene polyene antibiotic derived from Streptomyces natalensis. It possesses in vitro activity against a variety of yeast and filamentous fungi, including Candida, Aspergillus, Cephalosporium, Fusarium and Penicillium. Although the activity against fungi is dose-related, natamycin is predominantly fungicidal. Natamycin is not effective in vitro against gram-positive or gram-negative bacteria. Topical administration appears to produce effective concentrations of natamycin within the corneal stroma but not in intraocular fluid.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C33H47NO13
Molecular Weight
665.7252
Exact Mass
665.304
CAS #
7681-93-8
PubChem CID
5284447
Appearance
Off-white to light yellow solid powder
Density
1.4±0.1 g/cm3
Boiling Point
952.2±65.0 °C at 760 mmHg
Melting Point
2000ºC
Flash Point
529.7±34.3 °C
Vapour Pressure
0.0±0.6 mmHg at 25°C
Index of Refraction
1.620
LogP
0.74
Hydrogen Bond Donor Count
7
Hydrogen Bond Acceptor Count
14
Rotatable Bond Count
3
Heavy Atom Count
47
Complexity
1220
Defined Atom Stereocenter Count
14
SMILES
C[C@@H]1C/C=C/C=C/C=C/C=C/[C@@H](C[C@H]2[C@@H]([C@H](C[C@](O2)(C[C@H](C[C@@H]3[C@H](O3)/C=C/C(=O)O1)O)O)O)C(=O)O)O[C@H]4[C@H]([C@H]([C@@H]([C@H](O4)C)O)N)O
InChi Key
NCXMLFZGDNKEPB-FFPOYIOWSA-N
InChi Code
InChI=1S/C33H47NO13/c1-18-10-8-6-4-3-5-7-9-11-21(45-32-30(39)28(34)29(38)19(2)44-32)15-25-27(31(40)41)22(36)17-33(42,47-25)16-20(35)14-24-23(46-24)12-13-26(37)43-18/h3-9,11-13,18-25,27-30,32,35-36,38-39,42H,10,14-17,34H2,1-2H3,(H,40,41)/b4-3+,7-5+,8-6+,11-9+,13-12+/t18-,19-,20+,21+,22+,23-,24-,25+,27-,28+,29-,30+,32+,33-/m1/s1
Chemical Name
(1R,3S,5R,7R,8E,12R,14E,16E,18E,20E,22R,24S,25R,26S)-22-[(2R,3S,4S,5S,6R)-4-amino-3,5-dihydroxy-6-methyloxan-2-yl]oxy-1,3,26-trihydroxy-12-methyl-10-oxo-6,11,28-trioxatricyclo[22.3.1.05,7]octacosa-8,14,16,18,20-pentaene-25-carboxylic acid
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~16.67 mg/mL (~25.04 mM)
H2O : ~1 mg/mL (~1.50 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 1.67 mg/mL (2.51 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 1.67 mg/mL (2.51 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 16.7 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.5021 mL 7.5106 mL 15.0211 mL
5 mM 0.3004 mL 1.5021 mL 3.0042 mL
10 mM 0.1502 mL 0.7511 mL 1.5021 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Effect of natamycin on the uptake of arginine by yeast cells. At time 0, 14C-arginine (30 μM) was added to the cells. The uptake of arginine was followed in time and corrected for the amount of cells (ODunit). (A) Yeast cells were incubated for 5 min before the addition of arginine with natamycin at 0 μM (●), 2 μM (▲), 5 μM (◇), 10 μM (■), and 20 μM (□), and DMSO (○) was added as a control. (B) Release of arginine from yeast cells was studied by adding 20 μM natamycin (▲) or no natamycin (●) at 8 min after the addition of arginine, and the uptake of arginine was followed in time. The results shown are the averages of three separately performed experiments with SD.[2]. Polyene antibiotic that inhibits membrane transport proteins. Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11156-9.
  • Effect of natamycin on uptake of glucose and proline by yeast cells. Cells were incubated with 0 or 200 μM natamycin, after which the uptake of 14C-glucose or 14C-proline was assayed. The uptake of the different compounds by yeast cells is expressed as the percentage to the uptake of a compound by cells untreated with natamycin after 10 min. Additional details are provided in Experimental Methods. The results shown are the averages of two separately performed experiments with the spread of the data.[2]. Polyene antibiotic that inhibits membrane transport proteins. Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11156-9.
  • Effect of natamycin on uptake of arginine, proline, and glucose by A. niger conidia. Conidia were incubated for either 5 min or 5 h with 0 or 10 μM natamycin, after which the uptake of 14C-arginine, 14C-proline, or 14C-glucose was assayed. The uptake of the different compounds by conidia incubated for 0 or 10 min at 30 °C without antibiotic is normalized to 100% and compared with the effect of natamycin on substrate uptake. Negative uptake values occur because a smaller amount of compound was taken up by the spores after incubation with natamycin in comparison to the fast uptake in the absence of the inhibitor. Additional details are provided in Experimental Methods. The results shown are the averages of two separately performed experiments with the spread of the data.[2]. Polyene antibiotic that inhibits membrane transport proteins. Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):11156-9.
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