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NOD-IN-1

Alias: NOD-IN-1; NOD-IN1; NOD-IN 1; compound 4
Cat No.:V3277 Purity: ≥98%
NOD-IN-1 is a novel and potent mixed inhibitor of nucleotide-binding oligomerization domain (NOD)-like receptors withIC50of 5.74 μM and 6.45 μM for NOD1 and NOD2, respectively.
NOD-IN-1
NOD-IN-1 Chemical Structure CAS No.: 132819-92-2
Product category: NOD1
This product is for research use only, not for human use. We do not sell to patients.
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Product Description

NOD-IN-1 is a novel and potent mixed inhibitor of nucleotide-binding oligomerization domain (NOD)-like receptors with IC50 of 5.74 μM and 6.45 μM for NOD1 and NOD2, respectively. In the low micromolar range, it exhibited balanced inhibitory activity against both targets. NOD1 and NOD2 are significant members of the family of pattern recognition receptors and are essential for innate immunity. But several diseases have also been linked to overactivation of NODs, particularly NOD1. Unexpectedly, NOD1 continues to be a largely untapped target in this regard.

Biological Activity I Assay Protocols (From Reference)
Targets
NOD1; NOD2
ln Vitro
NOD-IN-1 is a potent mixed inhibitor of nucleotide-binding oligomerization domain (NOD)-like receptors, NOD1 and NOD2 with IC50 of 5.74 μM and 6.45 μM, respectively. NOD1 and NOD2 are significant members of the family of pattern recognition receptors and are essential for innate immunity. But several diseases have also been linked to overactivation of NODs, particularly NOD1. Unexpectedly, NOD1 continues to be a largely untapped target in this regard.
ln Vivo

Enzyme Assay
NOD-IN-1 is a potent mixed inhibitor of nucleotide-binding oligomerization domain (NOD)-like receptors, NOD1 and NOD2 with IC50 of 5.74 μM and 6.45 μM, respectively.
Cell Assay
Noditinib-1 and the synthesized potential NOD1 inhibitor NOD-IN-1 are used to screen these compounds for potential cytotoxicity by measuring the proliferation rates of HEK-Blue NOD1 cells in the presence of these compounds. A compound of interest, up to a 25 M concentration, is applied to cells for 24 hours. Since the residual metabolic activities of the HEK-Blue NOD1 cells do not fall below 80% at the highest concentration tested, a comparison of the observed metabolic activities with those of the untreated control demonstrated that all compounds are well tolerated by HEK-Blue NOD1 cells[1].
Animal Protocol


References

[1]. Identification of indole scaffold-based dual inhibitors of NOD1 and NOD2. Bioorg Med Chem. 2016 Nov 1;24(21):5221-5234.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H17NO4S
Molecular Weight
343.40
Exact Mass
343.087
Elemental Analysis
C, 62.96; H, 4.99; N, 4.08; O, 18.64; S, 9.34
CAS #
132819-92-2
Related CAS #
132819-92-2
PubChem CID
14783456
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
523.3±52.0 °C at 760 mmHg
Flash Point
270.3±30.7 °C
Vapour Pressure
0.0±1.4 mmHg at 25°C
Index of Refraction
1.609
LogP
4.68
Hydrogen Bond Donor Count
0
Hydrogen Bond Acceptor Count
4
Rotatable Bond Count
5
Heavy Atom Count
24
Complexity
548
Defined Atom Stereocenter Count
0
SMILES
S(C1C([H])=C([H])C(C([H])([H])[H])=C([H])C=1[H])(N1C(C(=O)OC([H])([H])C([H])([H])[H])=C([H])C2=C([H])C([H])=C([H])C([H])=C12)(=O)=O
InChi Key
OJMOGUKIYRAILM-UHFFFAOYSA-N
InChi Code
InChI=1S/C18H17NO4S/c1-3-23-18(20)17-12-14-6-4-5-7-16(14)19(17)24(21,22)15-10-8-13(2)9-11-15/h4-12H,3H2,1-2H3
Chemical Name
ethyl 1-(4-methylphenyl)sulfonylindole-2-carboxylate
Synonyms
NOD-IN-1; NOD-IN1; NOD-IN 1; compound 4
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~10 mM
Water: <1 mg/mL
Ethanol: <1 mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (7.28 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (7.28 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (7.28 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.9121 mL 14.5603 mL 29.1206 mL
5 mM 0.5824 mL 2.9121 mL 5.8241 mL
10 mM 0.2912 mL 1.4560 mL 2.9121 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
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  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • NOD-IN-1

    Figure 2.Proliferation rates, expressed as metabolic activities, of HEK-Blue cells after 24h treatment with the synthesized compounds and Noditinib-1 (25μM).2016 Nov 1;24(21):5221-5234.

  • NOD-IN-1

    Figure 3. Effects of synthesized compounds 4–7, 9–12 and Noditinib-1 (1) on the inhibition of C12-iE-DAP-induced NF-κB transcriptional activity.2016 Nov 1;24(21):5221-5234.

  • NOD-IN-1

    Figure 4. Inhibition of C12-iE-DAP-induced NF-κB transcriptional activity bycompounds 4 (NOD-IN-1)and 39–43.2016 Nov 1;24(21):5221-5234.

  • NOD-IN-1

    Figure 5. Effects of compounds 9 and 13–19 on the inhibition of C12-iE-DAP-induced NF-κB transcriptional activity.2016 Nov 1;24(21):5221-5234.

  • NOD-IN-1

    Figure 6. Inhibition of C12-iE-DAP-induced NF-κB transcriptional activity by compounds 12, 33–38, 44 and 45.2016 Nov 1;24(21):5221-5234.

  • NOD-IN-1

    Figure 1. The design of novel NOD1 inhibitors based on structures of 1 (Noditinib-1) and 2.2016 Nov 1;24(21):5221-5234.

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