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OABK

Cat No.:V11009 Purity: ≥98%
OABK HCl is a small molecule switch that may be utilized to control protein activity.
OABK
OABK Chemical Structure CAS No.: 1984862-48-7
Product category: New1
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
1mg
5mg
10mg
Other Sizes
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Product Description
OABK HCl is a small molecule switch that may be utilized to control protein activity. OABK (HCl) is a reagent for click chemistry. It has an Azide (N3) moiety and could undergo CuAAc (copper-catalyzed azide-alkyne cycloaddition reaction) with compounds bearing an Alkyne group. SPAAC (Strain-promoted alkyne-azide cycloaddition) may also happen with compounds bearing a BCN or DBCO group.
Biological Activity I Assay Protocols (From Reference)
ln Vitro
tiny molecular switch that causes the site-specific incorporation of o-azidobenzyloxycarbonyllysine (OABK) to activate protein activity. In three simple stages, 2-azidobenzyl alcohol can be converted to the amino acid OABK using succinimide carbonate ester. Lysine is created during deprotection, and upon incorporation of OABK, an active wild-type protein is produced. Conditional regulation of intracellular protein maturation can be achieved through the combination of small molecule activation and genetically encoded OABK. When OABK (0.5 mM) is added to EGFP at K85, it prevents the production of fluorophores until small molecule activation produces native lysine (PDB-based model). By reducing FLuc enzyme activity, OABK introduction at K206 decreases FLuc enzyme activity. Up until the enzyme is deprotected and activated by phosphine treatment, adenosine triphosphate (ATP) enters the active site. As in the Bright-Glo test's luciferase assay, OABK is added to FLuc in order to inhibit luciferase activity without small molecule activation [1].
References
[1]. Luo J, et al. Small-molecule control of protein function through Staudinger reduction. Nat Chem. 2016 Nov;8(11):1027-1034
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C14H20CLN5O4
Molecular Weight
357.792701721191
Exact Mass
357.12
CAS #
1984862-48-7
PubChem CID
122705997
Appearance
Typically exists as solid at room temperature
Hydrogen Bond Donor Count
4
Hydrogen Bond Acceptor Count
7
Rotatable Bond Count
10
Heavy Atom Count
24
Complexity
439
Defined Atom Stereocenter Count
1
SMILES
C1=CC=C(C(=C1)COC(=O)NCCCC[C@@H](C(=O)O)N)N=[N+]=[N-].Cl
InChi Key
JTXGXTOOHZYZDP-MERQFXBCSA-N
InChi Code
InChI=1S/C14H19N5O4.ClH/c15-11(13(20)21)6-3-4-8-17-14(22)23-9-10-5-1-2-7-12(10)18-19-16;/h1-2,5,7,11H,3-4,6,8-9,15H2,(H,17,22)(H,20,21);1H/t11-;/m0./s1
Chemical Name
(2S)-2-amino-6-[(2-azidophenyl)methoxycarbonylamino]hexanoic acid;hydrochloride
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment, avoid exposure to moisture.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~25 mg/mL (~69.87 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (6.99 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (6.99 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.5 mg/mL (6.99 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.7949 mL 13.9747 mL 27.9494 mL
5 mM 0.5590 mL 2.7949 mL 5.5899 mL
10 mM 0.2795 mL 1.3975 mL 2.7949 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Figure 1. Staudinger reduction-based protein activation through genetic encoding of OABK in living cells. (a) Structure of OABK and schematic of the phosphine-triggered protein activation through protecting group removal via a Staudinger reduction. OABK is site-specifically incorporated into a protein of interest via genetic code expansion, and then the protein is deprotected and activated through a phosphine-induced Staudinger reduction followed by a 1,4-elimination of the azidobenzyl group. (b) Micrographs confirming amino acid-dependent incorporation of OABK into mCherry-TAG-EGFP-HA in HEK293T cells. EGFP fluorescence was observed only in the presence of OABK, due to suppression of the TAG stop codon. Scale bar represents 20 µm. (c) Confirmation of OABK-dependent full-length protein expression through an anti-HA Western blot.[1].Luo J, et al. Small-molecule control of protein function through Staudinger reduction. Nat Chem. 2016 Nov;8(11):1027-1034
  • Figure 2. Small molecule-induced activation of EGFP fluorescence.(a) Incorporation of OABK (0.5 mM) at position K85 of EGFP inhibits fluorophore formation until the native lysine is generated through small molecule activation (model based on PDB 4EUL). (b) Micrographs of HEK293T cells showing EGFP fluorescence only in the presence of the small molecule 2-(diphenylphosphino)benzoic acid (2DPBA, 500 µM), but not in its absence. Scale bar represents 20 µm. (c) Time-lapse imaging and fluorescence quantification indicates a combined t1/2 of deprotection and EGFP maturation of 98 min. Error bars represent standard deviations from three cells.[1].Luo J, et al. Small-molecule control of protein function through Staudinger reduction. Nat Chem. 2016 Nov;8(11):1027-1034
  • Figure 3. Phosphine screening for Staudinger reduction-mediated deprotection and activation of firefly luciferase in cells and cell lysates.(a) Structures of the six phosphine derivatives TCEP (1), TCEP ester (2), TPP (3), TPPTS (4), 2DPBA (5), and 2DPBM (6). (b) Model of FLuc containing OABK at position K206, thereby blocking access of ATP to the catalytic site until the azidobenzyloxycarbonyl group is cleaved by the small molecule trigger (based on PDB 2D1S). (c) Initial screening of phosphines 1–6 (at maximum concentrations based on the solubility and cell viability, see Supplementary Figure 3) in order to identify efficient activators of OABK-FLuc in HEK293T cells and in (d) cell lysates. Error bars represent standard deviations from three independent experiments. (e) Live cell dose-dependent luciferase assays were conducted for the most efficient small molecule triggers 5 (5, 10, 25, 50, 100, 250, 500 µM) and 6 (5, 10, 25, 50, 100 µM), revealing 6 as the most active phosphine. The solubility of 6 in an aqueous environment limits its application to ≤100 µM. Error bars represent standard deviations from three independent experiments.[1].Luo J, et al. Small-molecule control of protein function through Staudinger reduction. Nat Chem. 2016 Nov;8(11):1027-1034
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