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Propidium Iodide

Alias: Propidium Diodide Propidium Iodide
Cat No.:V10092 Purity: ≥98%
Propidium Iodide is a red fluorescent dye and DNA intercalating agent that can be used to stain cells.
Propidium Iodide
Propidium Iodide Chemical Structure CAS No.: 25535-16-4
Product category: Fluorescent Dye
This product is for research use only, not for human use. We do not sell to patients.
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Purity & Quality Control Documentation

Purity: ≥98%

Purity: ≥98%

Product Description

Propidium Iodide is a red fluorescent dye and DNA intercalating agent that can be used to stain cells. Propidium Iodide is used in flow cytometry as a DNA stain to evaluate cell viability or DNA content in cell cycle analysis, and in microscopy to visualise the nucleus and other DNA-containing organelles. Propidium Iodide cannot cross the membrane of live cells, making it useful to differentiate necrotic, apoptotic and healthy cells.

Biological Activity I Assay Protocols (From Reference)
Targets
Nuclear staining agent
ln Vitro
Guidelines for use:
1.1 Preparation of stock solution: prepare 1 mg/mL stock solution in ddH2O.
1.2 Preparation of working solution: Dilute the Propidium Iodide stock solution to a working solution of 20–50 μg/mL using either preheated serum-free cell culture medium or PBS.
Note: Before use, please make sure that the concentration of the propidium iodide working solution is appropriate for your specific needes, you may adjust the concentration ofworking solution and incubation period.

2. Cell staining (suspension cells)
2.1 Centrifuge the cells, add PBS, and wash twice for a total of five minutes. One x 10^6 cells per milliliter.
2.2 After adding 1 mL of working solution, let it sit at room temperature for five to ten minutes.
2.3 Centrifuge for 3–4 minutes at 400 g, then remove the supernatant.
2.4 Wash the cells twice, for five minutes each time, with PBS added.
2.5 After resuspending cells in 1 mL serum-free medium or PBS, observe using a fluorescence microscope or flow cytometer.

3. Cell staining (adherent cells)
3.1 On clean coverslips, cultivate the adhering cells.
3.2 Take out the coverslip and remove any extra culture medium.
3.3 Add 100 μL of the Propidium Iodide working solution, give the cells a brief shake to fully coat them, and let them sit for five to thirty minutes. Propidium Iodide. 3.4 Rinse with culture media after aspirating out the dye working solution. Use a fluorescent microscope to observe two to three times, for five minutes at a time.
Note: If flow cytometry is to be used, the cells must first be digested by trypsin and resuspended before being stained.

Storage conditions: -20°C, protect from light and being moisturized, 1 year.

Safety notes:
1. Depending on the experimental needs, you may adjust the concentration of propidium iodide working solution and incubation period.
2. This product is intended solely for use in scientific research. It is prohibited from usage in food or medication, as well as in clinical diagnosis or treatment.
3. Propidium Iodide can cause cancer.Please wear a lab coat and disposable gloves for your health and safety.
Enzyme Assay
Flow cytometric analysis: Propidium iodide is prepared in 0.1% sodium citrate + 0.1% Triton X-100 (50 μg/mL). Then the 200 ×g centrifuged cell pellet is gently resuspended in 1.5 mL hypotonlc fluorochrome solution (Propidium iodide 50 μg/mL), in 12×75 polypropylene tubes. The tubes are placed at 4°C in the dark overnight before the flow cytometric analysis. The propidium Iodide fluorescence of individual nuclei is measured using a FACScan flow cytometer. The nuclei traverses the light beam of a 488 nm Argon laser. A 560 nm dichrolc nurror (DM 570) and a 600 nm band pass filter (bandwidth 35 nm) are used for collecting the red fluorescence due to propidium Iodide staining of DNA and the data are registered on a logarithmic scale. [2]
Cell Assay
Propidium Iodide is a red fluorescent used to stain cells. Propidium Iodide only can be taken up by cells with impaired membrane integrity, it can be used in cell cycle and cell viability assays, as well necrocytosis assays.

Example 1, the method for cell nucleus staining is shown below:
1. Cells are washed with PBS, and then incubates cells with Propidium Iodide (15 min).
2. Fluorescent images are acquired with a confocal laser scanning microscope.

Example 2, the method for cell staining is shown below:
1. Fix cultured cells with paraformaldehyde (4%; 10 min).
2. Incubate cells with Propidium Iodide (50 mg/L; 15 min; dark).
3. Fluorescent images are acquired with a confocal laser scanning microscope.
References
[1]. Hezel M, et al. Propidium iodide staining: a new application in fluorescence microscopy for analysis of cytoarchitecture in adult and developing rodent brain. Micron. 2012 Oct;43(10):1031-8.
[2]. Nicoletti I, et al. A rapid and simple method for measuring thymocyte apoptosis by propidium iodide staining and flow cytometry. J Immunol Methods. 1991 Jun 3;139(2):271-9.
[3]. A rapid and simple method for measuring thymocyte apoptosis by propidium iodidestaining and flow cytometry. J Immunol Methods. 1991 Jun 3;139(2):271-9
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H34I2N4
Molecular Weight
668.41
Exact Mass
668.08729
Elemental Analysis
C, 48.52 H, 5.13 I, 37.97 N, 8.38
CAS #
25535-16-4
Appearance
Pink to red solid powder
tPSA
55.9Ų
SMILES
C[N+](CC)(CCC[N+]1=C(C2=CC=CC=C2)C3=CC(N)=CC=C3C4=C1C=C(N)C=C4)CC.[I-].[I-]
InChi Key
XJMOSONTPMZWPB-UHFFFAOYSA-M
InChi Code
InChI=1S/C27H33N4.2HI/c1-4-31(3,5-2)17-9-16-30-26-19-22(29)13-15-24(26)23-14-12-21(28)18-25(23)27(30)20-10-7-6-8-11-20;;/h6-8,10-15,18-19,29H,4-5,9,16-17,28H2,1-3H3;2*1H/q+1;;/p-1
Chemical Name
3-(3,8-Diamino-6-phenylphenanthridin-5-ium-5-yl)propyl-diethyl-methylazanium diiodide
Synonyms
Propidium Diodide Propidium Iodide
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Note: Please store this product in a sealed and protected environment (e.g. under nitrogen), avoid exposure to moisture and light.
Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO : ~100 mg/mL (~149.61 mM)
H2O : ~3.57 mg/mL (~5.34 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (3.74 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (3.74 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: Solubility in Formulation 1: ≥ 2.5 mg/mL (3.7 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can take 100 μL of 25 mg/mL DMSO stock solution and add to 400 μL of PEG300, mix well (clear solution); Then add 50 μL of Tween 80 to the above solution, mix well (clear solution); Finally, add 450 μL of saline to the above solution, mix well (clear solution).
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.


Solubility in Formulation 2: ≥ 2.5 mg/mL (3.7 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can take 100 μL of 25 mg/mL DMSO stock solution and add to 900 μL of 20% SBE-β-CD in saline, mix well (clear solution).
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.



 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.4961 mL 7.4804 mL 14.9609 mL
5 mM 0.2992 mL 1.4961 mL 2.9922 mL
10 mM 0.1496 mL 0.7480 mL 1.4961 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

  • Calculate the Mass of a compound required to prepare a solution of known volume and concentration
  • Calculate the Volume of solution required to dissolve a compound of known mass to a desired concentration
  • Calculate the Concentration of a solution resulting from a known mass of compound in a specific volume
An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT05001386 Not yet recruiting Biological: Blood collection for the
evaluation of the anti-drugs sensitivity
Myeloproliferative Disorders
Lymphoproliferative Disorders
Hospices Civils de Lyon March 2022 Not Applicable
NCT06331676 Not yet recruiting Procedure: Tissue collection
Other: Data collection
Endometriosis Hospices Civils de Lyon April 2024 Not Applicable
NCT00775606 Terminated Has Results Drug: Lopinavir 400 mg/ritonavir 100 mg
Drug: Efavirenz
Acquired Immune Deficiency Syndrome Rush University Medical Center October 2008 Phase 4
NCT06312150 Recruiting Other: Analysis of peripheral
blood (control group)
Tumor Meyer Children's Hospital IRCCS December 17, 2019 Not Applicable
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