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PROTAC Sirt2 Degrader-1

Alias: Sirt2-PROTAC-1; Sirt2 PROTAC-1; Sirt2-PROTAC1; Sirt2 PROTAC 1; PROTAC Sirt2 Degrader 1; PROTAC Sirt2 Degrader-1
Cat No.:V3397 Purity: ≥98%
PROTAC Sirt2 Degrader-1 is a novel, potent PROTAC (proteolysis targeting chimera) which was identified based on the combination of the unique features of the sirtuin rearranging ligands (SirReals) as highly potent and isotype-selective Sirt2 inhibitors with thalidomide, a bona fide cereblon ligand.
PROTAC Sirt2 Degrader-1
PROTAC Sirt2 Degrader-1 Chemical Structure CAS No.: 2098487-75-1
Product category: Sirtuin
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
2mg
5mg
10mg
Other Sizes
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

PROTAC Sirt2 Degrader-1 is a novel, potent PROTAC (proteolysis targeting chimera) which was identified based on the combination of the unique features of the sirtuin rearranging ligands (SirReals) as highly potent and isotype-selective Sirt2 inhibitors with thalidomide, a bona fide cereblon ligand. In its capacity as a Sirt2 degrader, PROTAC Sirt2 Degrader-1 exhibits an IC50 of 0.25 μM for Sirt2, while having no effect on Sirt1/Sirt3 (IC50s > 100 μM). The highly adaptable linking strategy and azide derived from thalidomide can be easily applied to alkynylated ligands of other targets. The HeLa cell undergoes hyperacetylation and enhanced process elongation due to isotype-selective Sirt2 degradation induced by PROTAC Sirt2 Degrader-1. With regard to the ability to chemically induce the degradation of an epigenetic eraser protein, PROTAC Sirt2 Degrader-1 is the first example of a probe.

Biological Activity I Assay Protocols (From Reference)
Targets
SIRT2 ( IC50 = 0.25 μM )
ln Vitro
In HeLa cells, Sirt2 degradation is induced by PROTAC Sirt2 Degrader-1 (Compound 12; 10 μM, 1-6 hours) [1].
Cell Assay
Western Blot Analysis[1]
Cell Types: HeLa cells
Tested Concentrations: 10 µM
Incubation Duration: 1-6 hrs (hours)
Experimental Results: Causes degradation of Sirt2, but has no effect on Sirt1 levels.
References

[1]. Chemically Induced Degradation of Sirtuin 2 (Sirt2) by a Proteolysis Targeting Chimera (PROTAC) Based on Sirtuin Rearranging Ligands (SirReals). J Med Chem. 2018 Jan 25;61(2):482-491.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C40H40N10O8S2
Molecular Weight
852.937805175781
Exact Mass
852.25
Elemental Analysis
C, 56.33; H, 4.73; N, 16.42; O, 15.01; S, 7.52
CAS #
2098487-75-1
PubChem CID
135397670
Appearance
White to off-white solid powder
LogP
3.2
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
15
Rotatable Bond Count
18
Heavy Atom Count
60
Complexity
1540
Defined Atom Stereocenter Count
0
InChi Key
GRYRXFYWVDWPQY-UHFFFAOYSA-N
InChi Code
InChI=1S/C40H40N10O8S2/c1-23-15-24(2)44-40(43-23)59-22-34(53)46-39-42-18-28(60-39)17-25-7-5-8-27(16-25)57-20-26-19-49(48-47-26)14-4-3-13-41-33(52)21-58-31-10-6-9-29-35(31)38(56)50(37(29)55)30-11-12-32(51)45-36(30)54/h5-10,15-16,18-19,30H,3-4,11-14,17,20-22H2,1-2H3,(H,41,52)(H,42,46,53)(H,45,51,54)
Chemical Name
N-[4-[4-[[3-[[2-[[2-(4,6-dimethylpyrimidin-2-yl)sulfanylacetyl]amino]-1,3-thiazol-5-yl]methyl]phenoxy]methyl]triazol-1-yl]butyl]-2-[2-(2,6-dioxopiperidin-3-yl)-1,3-dioxoisoindol-4-yl]oxyacetamide
Synonyms
Sirt2-PROTAC-1; Sirt2 PROTAC-1; Sirt2-PROTAC1; Sirt2 PROTAC 1; PROTAC Sirt2 Degrader 1; PROTAC Sirt2 Degrader-1
HS Tariff Code
2934.99.03.00
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 100 mg/mL (~117.2 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (2.93 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (2.93 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 1.1724 mL 5.8621 mL 11.7242 mL
5 mM 0.2345 mL 1.1724 mL 2.3448 mL
10 mM 0.1172 mL 0.5862 mL 1.1724 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
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