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SCR7

Alias:
Cat No.:V1434 Purity: ≥98%
SCR7 (SCR-7; SCR 7) is a potent and selective inhibitor of DNA Ligase IV with potential anticancer activity.
SCR7
SCR7 Chemical Structure CAS No.: 1533426-72-0
Product category: DNA(RNA) Synthesis
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of SCR7:

  • SCR7 pyrazine
Official Supplier of:
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Top Publications Citing lnvivochem Products
Purity & Quality Control Documentation

Purity: ≥98%

Product Description

SCR7 (SCR-7; SCR 7) is a potent and selective inhibitor of DNA Ligase IV with potential anticancer activity. The enzyme DNA Ligase IV is in charge of using the non-homologous end joining (NHEJ) repair pathway to fix DNA double-strand breaks (DSB).

Biological Activity I Assay Protocols (From Reference)
Targets
DNA Ligase IV; CRISPR/Cas9
ln Vitro

SCR7 efficiently prevents the creation of multimers at concentrations greater than 200 μM. With IC50 values of 40, 34, 44, 8.5, 120, 10, and 50 μM, respectively, SCR7 effectively suppresses the growth of MCF7, A549, HeLa, T47D, A2780, HT1080, and Nalm6 cells. [1] SCR7 inhibits the NHEJ repair of DSBs produced by CRISPR-Cas9. [2]SCR7 enhances the effectiveness of CRISPR/Cas9-mediated HDR-mediated genome editing in mouse embryos and mammalian cells by up to 19 times[3].

ln Vivo
SCR7 treatment (10 mg/kg, i.m.) significantly decreases the tumor caused by breast adenocarcinoma and results in a 4-fold increase in longevity when compared to the control group. Nevertheless, neither tumor regression nor increased lifespan is seen in Swiss albino mice bearing the Dalton's lymphoma tumor model when SCR7 (20 mg/kg, i.p.) is administered. The cytotoxic effects of radiation, etoposide, and 3-Aminobenzamide on tumors derived from Dalton's lymphoma (DLA) cells are significantly enhanced in BALB/c mice when SCR7 (20 mg/kg, i.p.) is administered.[1]
Enzyme Assay
The oligomeric DNA substrates (5' compatible and 5' noncompatible ends) and increasing concentrations of purified Ligase IV/XRCC4 complex (30, 60, and 120 fmol) are added to the SCR7-treated extracts to conduct the complementation experiment. At 25°C, reactions are incubated for two hours. Following that, the reaction products are separated on an 8% denaturing PAGE. A PhosphorImager is used to detect the signal after the gel has dried and been exposed, and Multi Gauge (V3.0) software is used for analysis.
Cell Assay
MTT and trypan blue assays are used to measure the proliferation of cancer cells. In summary, SCR7 (10, 50, 100, and 250 μM) is added to MCF7, CEM, HeLa, A549, HT1080, A2780, T47D, Nalm6, N114, and K562 cells during 24 or 48 hours of growth before the cells are tested using MTT or trypan blue. Every experiment is conducted at least three separate times.
Animal Protocol

Animal/Disease Models: BALB/c mice bearing breast adenocarcinoma tumors [1]
Doses: 10 mg/kg
Route of Administration: Intraperitoneal injection/ip; twice a day
Experimental Results: Significantly suppressed breast adenocarcinoma tumors and increased lifespan of animals.
CRISPR components mixture (Cas9 mRNA, sgRNA and targeting template) and 10 mM of Scr7 NHEJ inhibitor (to 1 mM final) were injected into the cytoplasm at the pronuclear stage.
Kell-LPETG mice
References

[1]. Cell . 2012 Dec 21;151(7):1474-87.

[2]. Nat Biotechnol . 2015 May;33(5):543-8.

[3]. Scientific Reports. 2017, 7, Article number: 8943.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C18H12N4OS
Molecular Weight
332.38
Exact Mass
334.09
Elemental Analysis
C, 64.65; H, 4.22; N, 16.75; O, 4.78; S, 9.59
CAS #
1533426-72-0
Related CAS #
14892-97-8
Appearance
Yellow solid powder
LogP
2.6
tPSA
97.9Ų
SMILES
C1=CC=C(C=C1)C=NC2=C(NC(=S)NC2=O)/N=C/C3=CC=CC=C3
InChi Key
NEEVCWPRIZJJRJ-LWRDCAMISA-N
InChi Code
InChI=1S/C18H14N4OS/c23-17-15(19-11-13-7-3-1-4-8-13)16(21-18(24)22-17)20-12-14-9-5-2-6-10-14/h1-12H,(H2,21,22,23,24)/b19-11?,20-12+
Chemical Name
5-(benzylideneamino)-6-[(E)-benzylideneamino]-2-sulfanylidene-1H-pyrimidin-4-one
Synonyms

SCR-7; SCR 7; SCR7

HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~66 mg/mL (~198.6 mM)
Water: <1 mg/mL
Ethanol: ~3 mg/mL (~9.0 mM)
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.5 mg/mL (7.48 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 25.0 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.5 mg/mL (7.48 mM) in 10% DMSO + 40% PEG300 + 5% Tween80 + + 45% Saline
For example, if 1 mL of working solution is to be prepared, you can take 100 μL of 25 mg/mL of DMSO stock solution and add tO + 400 μL of PEG300, mix well (clear solution); Then add 50 μL of Tween 80 to the above solution, mix well (clear solution); Finally, add 450 μL of saline to the above solution, mix well (clear solution).
Preparation of saline: Dissolve 0.9 g of sodium chloride in ddH ₂ O and make up to 100 mL to obtain a clear and transparent saline solution.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 3.0086 mL 15.0430 mL 30.0860 mL
5 mM 0.6017 mL 3.0086 mL 6.0172 mL
10 mM 0.3009 mL 1.5043 mL 3.0086 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

Molarity Calculator allows you to calculate the mass, volume, and/or concentration required for a solution, as detailed below:

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
  • Enter 350.26 in the Molecular Weight (MW) box
  • Enter 10 in the Concentration box and choose the correct unit (mM)
  • Enter 5 in the Volume box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
  • Enter 10 into the Concentration (Start) box and choose the correct unit (mM)
  • Enter 25 into the Concentration (End) box and select the correct unit (mM)
  • Enter 25 into the Volume (End) box and choose the correct unit (mL)
  • Click the “Calculate” button
  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
  • To calculate molar mass of a chemical compound, please enter the chemical/molecular formula and click the “Calculate’ button.
Definitions of molecular mass, molecular weight, molar mass and molar weight:
  • Molecular mass (or molecular weight) is the mass of one molecule of a substance and is expressed in the unified atomic mass units (u). (1 u is equal to 1/12 the mass of one atom of carbon-12)
  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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Reconstitution Calculator allows you to calculate the volume of solvent required to reconstitute your vial.

  • Enter the mass of the reagent and the desired reconstitution concentration as well as the correct units
  • Click the “Calculate” button
  • The answer appears in the Volume (to add to vial) box
In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
  • Effects of small molecules on cell viability and cell cycle. Effects of small molecules (Scr7, L755507, and resveratrol) on (A) cell viability and (B) cell cycle. Scientific Reports. 2017, 7, Article number: 8943.
  • Structural and Functional Characterization of SCR7. Cell . 2012 Dec 21;151(7):1474-87.
  • Design, Synthesis, and Characterization of SCR7 and Its Effect on DNA End-Joining. Cell . 2012 Dec 21;151(7):1474-87.
  • verexpression and Purification of Ligases and Effect of SCR7 on DNA End-Joining Catalyzed by Liver and Kidney Extracts. Cell . 2012 Dec 21;151(7):1474-87.
  • Evaluation of SCR7 Binding to the DBD of Ligase IV and Its Effect on Binding to DSBs. Cell . 2012 Dec 21;151(7):1474-87.
  • Evaluation of the Effect and Specificity of SCR7 on NHEJ and Cytotoxicity within Cells. Cell . 2012 Dec 21;151(7):1474-87.
  • Effect of SCR7 on Tumor Progression in Mice Models Bearing Various Tumors. Cell . 2012 Dec 21;151(7):1474-87.
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