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SHP099 HCl

Alias: SHP-099 hydrochloride; SHP099 HCl; SHP-099; SHP099; SHP 099
Cat No.:V3046 Purity: ≥98%
SHP099 HCl, the HCl salt of SHP-099, isan orally bioavailable, and allostericSHP2 inhibitor with antitumor and anti-inflammatory effects.
SHP099 HCl
SHP099 HCl Chemical Structure CAS No.: 1801747-11-4
Product category: SHP2
This product is for research use only, not for human use. We do not sell to patients.
Size Price Stock Qty
5mg
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Other Forms of SHP099 HCl:

  • SHP099
  • SHP099 monohydrochloride
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

SHP099 HCl, the HCl salt of SHP-099, is an orally bioavailable, and allosteric SHP2 inhibitor with antitumor and anti-inflammatory effects. The inhibitor has an IC50 of 70 nM and inhibits SHP2 [Src homology-2 domain containing protein tyrosine phosphatase-2]. The PTPN11 gene encodes SHP2, a nonreceptor protein tyrosine phosphatase (PTP) that is involved in cell growth and differentiation through the MAPK signaling pathway. Additionally, SHP2 is said to be crucial to the PD-1/PD-L1 pathway, which causes programmed cell death. SHP099 functions as an allosteric modulator (inhibitor) of SHP2, stabilizing the autoinhibited conformation. The binding location in a previously unidentified allosteric binding pocket was identified by X-ray crystallography.

Biological Activity I Assay Protocols (From Reference)
Targets
SHP-2 (IC50 = 0.07 μM)
ln Vitro

SHP099 exhibits a 1.4 μM IC50 in the KYSE-520 model, which inhibits cell proliferation. There is no biochemical inhibitory activity visible in the phosphatase or kinase panels, indicating that the aminopyrazine series (SHP099) is highly selective for SHP2. Additionally, SHP099 exhibits high permeability with no discernible efflux in Caco-2 cells and high solubility (>0.5 mM in pH 6.8 buffer)[1]. SHP099 maintains SHP2 in a conformation that is auto-inhibited. In vitro proliferation of receptor-tyrosine-kinase-driven human cancer cells is inhibited by SHP099 through suppression of RAS-ERK signaling. Preclinical safety pharmacology panel representing 49 common adverse drug reaction targets shows that SHP099 has only modest activity against 5HT3. Due to its high degree of target selectivity, SHP099 exhibits no activity against SHP1, which is the closest homologue of SHP2 and shares 61% of its amino acid sequence identity. For SHP2-dependent MDA-MB-468 and KYSE520 cells, it inhibits p-ERK with an IC50 of approximately 0.25 μM; however, A2058 cells are not affected. On the p-AKT levels in the same cells, no change is seen. By directly inhibiting SHP2 on its target, SHP099 prevents MAPK signaling and cell proliferation in RTK-dependent cells[2].

ln Vivo
SHP099 exhibits a bioavailability of 46% F and an acceptable oral exposure of 5 mg/kg PO and 565 μM/h. With dose-dependent pathway inhibition and antitumor activity demonstrated in xenograft models, SHP099 is a powerful, selective, highly soluble, orally bioavailable, and effective SHP2 inhibitor[1]. SHP099 taken orally is well tolerated and exhibits dose-dependent anti-tumor activity in the KYSE520 xenograft model[2].
Enzyme Assay
Biochemical assay. The binding of bis-tyrosylphorphorylated peptides to SHP2's Src Homology 2 (SH2) domains causes allosteric activation of the protein. The release of SHP2's auto-inhibitory interface during the latter activation step makes the SHP2 PTP active and ready for substrate recognition and reaction catalysis. The surrogate substrate DiFMUP was used in a prompt fluorescence assay format to track the catalytic activity of SHP2. Phosphatase reactions were carried out in a 384-well black polystyrene plate with a flat bottom, low flange, and non-binding surface (Corning, Cat# 3575) at room temperature. A final reaction volume of 25 μL was used, and the assay buffer conditions were as follows: pH 7.2, 75 mM NaCl, 75 mM KCl, 1 mM EDTA, 0.05% P-20, and 5 mM DTT are all present in 60 mM HEPES. Using an assay where 0.5 nM of SHP2 was incubated with 0.5 μM of peptide IRS1_pY1172(dPEG8)pY1222 (sequence:H2NLN(pY)IDLDLV(dPEG8)LST(pY)ASINFQK-amide), the inhibitory effect of the tested compounds (concentrations ranging from 0.003 – 100 μM) was observed. The reaction was incubated at 25 oC for 30 minutes (200 μM for 2-593, 100 μM for 1-525 construct) after the surrogate substrate DiFMUP (Invitrogen, cat# D6567, 200 μM) was added. The next step involved adding 5 μL of a 160 μM bpV(Phen) solution (Enzo Life Sciences cat# ALX-270-204) to quench the reaction. At excitation and emission wavelengths of 340 nm and 450 nm, respectively, the fluorescence signal was observed using a microplate reader (Envision, Perki-Elmer). Normalized IC50 regression curve fitting with control-based normalization was used to analyze the inhibitor dose response curves.
Cell Assay
In a 96-well plate culture, KYSE-520 cells (30,000 cells/well) are grown overnight and then treated with SHP2 inhibitors for two hours at 37 °C at concentrations of 20, 6.6, 2.2, 0.74, 0.24, 0.08, and 0.027 μM. 30 μL of the lysis buffer included with the SureFire p-ERK assay kit is added to end the incubations.
Animal Protocol
10, 30, or 100 mg/kg qd by oral gavage.
Female nude mice were inoculated subcutaneously (3 x 106 cells) in a suspension containing 50% phenol red-free matrigel (BD Biosciences) in Hank’s balanced salt solution with parental KYSE-520 cells.
References

[1]. J Med Chem . 2016 Sep 8;59(17):7773-82.

[2]. Nature . 2016 Jul 7;535(7610):148-52.

These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C16H19CL2N5.HCL
Molecular Weight
388.72
Exact Mass
387.078
Elemental Analysis
C, 49.44; H, 5.19; Cl, 27.36; N, 18.02
CAS #
1801747-11-4
Related CAS #
SHP099;1801747-42-1;SHP099 monohydrochloride;2200214-93-1
PubChem CID
121241170
Appearance
Yellow solid powder
Hydrogen Bond Donor Count
3
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
2
Heavy Atom Count
24
Complexity
402
Defined Atom Stereocenter Count
0
SMILES
ClC1C(=C([H])C([H])=C([H])C=1C1C(N([H])[H])=NC(=C([H])N=1)N1C([H])([H])C([H])([H])C(C([H])([H])[H])(C([H])([H])C1([H])[H])N([H])[H])Cl.Cl[H]
InChi Key
KHQHYRFUYAXWOQ-UHFFFAOYSA-N
InChi Code
InChI=1S/C16H19Cl2N5.ClH/c1-16(20)5-7-23(8-6-16)12-9-21-14(15(19)22-12)10-3-2-4-11(17)13(10)18;/h2-4,9H,5-8,20H2,1H3,(H2,19,22);1H
Chemical Name
6-(4-amino-4-methylpiperidin-1-yl)-3-(2,3-dichlorophenyl)pyrazin-2-amine;hydrochloride
Synonyms
SHP-099 hydrochloride; SHP099 HCl; SHP-099; SHP099; SHP 099
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ~4.2 mg/mL (with ultrasonic)
Water: ~7.7 mg/mL (with ultrasonic)
Ethanol: <1mg/mL
Solubility (In Vivo)
Note: Listed below are some common formulations that may be used to formulate products with low water solubility (e.g. < 1 mg/mL), you may test these formulations using a minute amount of products to avoid loss of samples.

Injection Formulations
(e.g. IP/IV/IM/SC)
Injection Formulation 1: DMSO : Tween 80: Saline = 10 : 5 : 85 (i.e. 100 μL DMSO stock solution 50 μL Tween 80 850 μL Saline)
*Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH ₂ O to obtain a clear solution.
Injection Formulation 2: DMSO : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL DMSO 400 μLPEG300 50 μL Tween 80 450 μL Saline)
Injection Formulation 3: DMSO : Corn oil = 10 : 90 (i.e. 100 μL DMSO 900 μL Corn oil)
Example: Take the Injection Formulation 3 (DMSO : Corn oil = 10 : 90) as an example, if 1 mL of 2.5 mg/mL working solution is to be prepared, you can take 100 μL 25 mg/mL DMSO stock solution and add to 900 μL corn oil, mix well to obtain a clear or suspension solution (2.5 mg/mL, ready for use in animals).
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Injection Formulation 4: DMSO : 20% SBE-β-CD in saline = 10 : 90 [i.e. 100 μL DMSO 900 μL (20% SBE-β-CD in saline)]
*Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.
Injection Formulation 5: 2-Hydroxypropyl-β-cyclodextrin : Saline = 50 : 50 (i.e. 500 μL 2-Hydroxypropyl-β-cyclodextrin 500 μL Saline)
Injection Formulation 6: DMSO : PEG300 : castor oil : Saline = 5 : 10 : 20 : 65 (i.e. 50 μL DMSO 100 μLPEG300 200 μL castor oil 650 μL Saline)
Injection Formulation 7: Ethanol : Cremophor : Saline = 10: 10 : 80 (i.e. 100 μL Ethanol 100 μL Cremophor 800 μL Saline)
Injection Formulation 8: Dissolve in Cremophor/Ethanol (50 : 50), then diluted by Saline
Injection Formulation 9: EtOH : Corn oil = 10 : 90 (i.e. 100 μL EtOH 900 μL Corn oil)
Injection Formulation 10: EtOH : PEG300Tween 80 : Saline = 10 : 40 : 5 : 45 (i.e. 100 μL EtOH 400 μLPEG300 50 μL Tween 80 450 μL Saline)


Oral Formulations
Oral Formulation 1: Suspend in 0.5% CMC Na (carboxymethylcellulose sodium)
Oral Formulation 2: Suspend in 0.5% Carboxymethyl cellulose
Example: Take the Oral Formulation 1 (Suspend in 0.5% CMC Na) as an example, if 100 mL of 2.5 mg/mL working solution is to be prepared, you can first prepare 0.5% CMC Na solution by measuring 0.5 g CMC Na and dissolve it in 100 mL ddH2O to obtain a clear solution; then add 250 mg of the product to 100 mL 0.5% CMC Na solution, to make the suspension solution (2.5 mg/mL, ready for use in animals).
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Oral Formulation 3: Dissolved in PEG400
Oral Formulation 4: Suspend in 0.2% Carboxymethyl cellulose
Oral Formulation 5: Dissolve in 0.25% Tween 80 and 0.5% Carboxymethyl cellulose
Oral Formulation 6: Mixing with food powders


Note: Please be aware that the above formulations are for reference only. InvivoChem strongly recommends customers to read literature methods/protocols carefully before determining which formulation you should use for in vivo studies, as different compounds have different solubility properties and have to be formulated differently.

 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.5725 mL 12.8627 mL 25.7255 mL
5 mM 0.5145 mL 2.5725 mL 5.1451 mL
10 mM 0.2573 mL 1.2863 mL 2.5725 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

Calculator

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An example of molarity calculation using the molarity calculator is shown below:
What is the mass of compound required to make a 10 mM stock solution in 5 ml of DMSO given that the molecular weight of the compound is 350.26 g/mol?
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  • Enter 10 in the Concentration box and choose the correct unit (mM)
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  • The answer of 17.513 mg appears in the Mass box. In a similar way, you may calculate the volume and concentration.

Dilution Calculator allows you to calculate how to dilute a stock solution of known concentrations. For example, you may Enter C1, C2 & V2 to calculate V1, as detailed below:

What volume of a given 10 mM stock solution is required to make 25 ml of a 25 μM solution?
Using the equation C1V1 = C2V2, where C1=10 mM, C2=25 μM, V2=25 ml and V1 is the unknown:
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  • The answer of 62.5 μL (0.1 ml) appears in the Volume (Start) box
g/mol

Molecular Weight Calculator allows you to calculate the molar mass and elemental composition of a compound, as detailed below:

Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
Instructions to calculate molar mass (molecular weight) of a chemical compound:
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Definitions of molecular mass, molecular weight, molar mass and molar weight:
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  • Molar mass (molar weight) is the mass of one mole of a substance and is expressed in g/mol.
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
Step 2: Enter in vivo formulation (This is only a calculator, not the exact formulation for a specific product. Please contact us first if there is no in vivo formulation in the solubility section.)
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Calculation results

Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
             (2) Be sure to add the solvent(s) in order.

Biological Data
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