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ZANUBRUTINIB

Alias: BGB-3111; BGB 3111; Brukinsa; BGB-3111; AG9MHG098Z; Zanubrutinib [INN]; Zanubrutinib [USAN]; BGB3111
Cat No.:V3979 Purity: ≥98%
Zanubrutinib (formerly known as BGB-3111), an S-enantiomer, is a novel, highly selective, second generation BTK inhibitor, currently under clinical investigation in hematological cancers.
ZANUBRUTINIB
ZANUBRUTINIB Chemical Structure CAS No.: 1691249-45-2
Product category: Btk
This product is for research use only, not for human use. We do not sell to patients.
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Other Forms of ZANUBRUTINIB:

  • (±)-Zanubrutinib
  • (R)-Zanubrutinib
Official Supplier of:
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Purity & Quality Control Documentation

Purity: ≥98%

Product Description

Zanubrutinib (formerly known as BGB-3111), an S-enantiomer, is a novel, highly selective, second generation BTK inhibitor, currently under clinical investigation in hematological cancers. BGB-3111 showed evidence of nanomolar BTK inhibition activity in both biochemical and cellular assays. BGB-3111 exhibited potent inhibition of cell proliferation in multiple MCL and DLBCL cell lines, as well as blocking downstream PLC-γ2 signaling and BTK autophosphorylation triggered by BCR aggregation. BGB-3111 demonstrated far more constrained off-target activities against a panel of kinases, including ITK, when compared to ibrutinib. Ibrutinib considerably reduced rituximab-induced NK cell IFN-γ secretion as well as in vitro cytotoxicity on mantle cell lymphoma cells; however, BGB-3111 was at least ten times less effective than ibrutinib in preventing rituximab-induced ADCC, which is in line with its feeble ITK inhibition activity.

Biological Activity I Assay Protocols (From Reference)
Targets
BTK/Bruton tyrosine kinase
ln Vitro
BGB-3111 is more selective for BTK vs. EGFR, FGR, FRK, HER2, HER4, ITK, JAK3, LCK, BLK, and TEC than ibrutinib in biochemical and cellular assays[1].
BGB-3111 potently inhibits cell proliferation in multiple MCL and DLBCL cell lines by blocking downstream PLC-γ2 signaling and inhibiting BTK autophosphorylation triggered by BCR aggregation[2].
ln Vivo
BGB-3111 exhibits better oral bioavailability than ibrutinib in preclinical animal studies, achieving higher exposure and more complete target inhibition in the tissues[1].
BGB-3111 treatment causes a dose-dependent BTK occupancy in mouse BTK occupancy assays, and it exhibits approximately three times the potency of ibrutinib in target organs, such as the spleen and PBMC[2].
BGB-3111 exhibits better efficacy than ibrutinib and induces dose-dependent anti-tumor effects in both the REC-1 MCL and ABC subtype DLBCL (TMD-8) xenograft models. According to a rat toxicity study, BGB-3111 is highly well tolerated, and even at doses of up to 250 mg/kg/day, the MTD is not reached[3].
Enzyme Assay
Procedure for protein precipitation experiment:[4]
human BTK protein were pre-incubated with BGB-3111 (31a, Zanubrutinib) or B43 (a reversible BTK inhibitor without the reactive chemical group) to form BTK/compound complexes (with BTK kinase in excess to ensure complete binding of compounds by BTK protein). The human BTK protein was then denatured and precipitated by centrifugation. The supernatants were analyzed for quantity of the original compound by LC-MS/MS or HPLC. B43 remained in the supernatant regardless of presence or absence of BTK protein during pre- S8 incubation, consistent with the reversible nature of its BTK binding (Figure 3B). In contrast, 31a was only recovered in the supernatant when pre-incubated without BTK protein. Upon preincubation with BTK, 31a largely disappeared from the supernatant (Figure 3A), consistent with the notion that 31a bound covalently/irreversibly to BTK protein thereby was removed from supernatant with precipitated BTK protein. The data also showed that the covalent bond formation between BTK and 31a was largely completed within 5 minutes[4].
In both biochemical and cellular assays, BGB-3111 demonstrated nanomolar BTK inhibition activity. In several MCL and DLBCL cell lines, BGB-3111 inhibited BCR aggregation-triggered BTK autophosphorylation, blocked downstream PLC-γ2 signaling, and potently inhibited cell proliferation. In comparison with ibrutinib, BGB-3111 showed much more restricted off-target activities against a panel of kinases, including ITK. While ibrutinib significantly inhibited rituximab-induced NK cell IFN-γ secretion and in vitro cytotoxicity on mantle cell lymphoma cells, BGB-3111 was at least 10-fold weaker than ibrutinib in inhibiting rituximab induced ADCC, consistent with its weak ITK inhibition activity.[2]
Microsome intrinsic clearance: [4]
Compounds (1 µM) were incubated in the liver microsomes at protein concentration of 0.5 mg/mL. The reactions were terminated S50 at 0, 2, 6, 10, 20, 30 min for human and 0, 5, 10, 20, 40, 60 min for dog, rat and mouse after the reactions were initiated. Compounds were analyzed using LC-MS/MS. Natural log of percentage remaining of compounds was plotted against the incubation time. The intrinsic clearance (CLint) was calculated with the following equation, where Cprotein was the microsomal protein concentration in the incubation system. CLint = -slope/Cprotein.[4]
Cytochrome P450 Inhibition: [4]
The human CYPs inhibition potential of compounds was evaluated based on the measurement of IC50 values in pooled human liver microsomes using 8 CYP probe substrates along with sample analysis by LC-MS/MS methods. Serial concentrations of compounds were incubated with each probe substrate in pooled human liver microsomes. Selective inhibitors were used as the positive controls to validate the incubation systems. Formation rate of the probe metabolites was monitored to calculate the IC50 values.
Cell Assay
Cellular toxicity evaluation of BGB-3111 (31a, Zanubrutinib) (HEK293 and Ramos Proliferation Assay): The growthinhibitory activity of compounds in HEK293 and Ramos was determined using CellTiter-Glo luminescent cell viability assay. The number of cells seeded per well of a 96-well plate was optimized for each cell line to ensure logarithmic growth over 6 days treatment period (1000 cells/well for HEK293 cells, 6000 cells/well for Ramos cells). Cells were treated in triplicate with a 10-point dilution series. Following a 6-day exposure to the compound, a volume of CellTiter-Glo reagent equal to the volume of cell culture medium present in each well was added. Mixture was mixed on an orbital shaker for 5 minutes to allow cell lysis, followed by 10 minutes incubation at room temperature to allow development and stabilization of luminescent signal, which corresponded to quantity of ATP and thus the quantity of metabolically active cells. Luminescent signal was measured using PHERAstar FS reader. IC50 values for cell viability were determined with GraphPad Prism software.[4]
Animal Protocol
Pharmacokinetics (PK) study in rats: [4]
Sprague-Dawley rats were housed in temperature (20-25°C) and humidity (40-70%) controlled facility with 12-hour light/dark cycle. The rats were sterilized water. The animals were fasted overnight prior to dosing until 4 hours post dosing. Water was not restricted during the study. Blood samples (0.15 mL) were collected via jugular vein cannula into dry heparinized (coated with 0.25% heparin in saline) tubes. For the IV administered groups, the sampling time points were pre-dose, 5, 15, 30, 45 min, 1, 2, 3, 4 and 6 h post-dose. For the oral administered groups, the sampling time points were pre-dose 15, 30 min, 1, 2, 3, 4, 6, 8, 12, and 24 h post-dose. Plasma samples were separated via centrifugation at 5500 rpm for 10 min, and stored in -30°C freezer until analysis. The plasma samples were analysis using LC-MS/MS with low limit of quantification (LLOQ) at 1 ng/mL. All PK parameters were calculated with non-compartment analysis using Phoenix WinNonlin 6.3.
Plasma protein binding: [4]
The plasma protein binding of compounds was measured using equilibrium dialysis with HTDialysis equilibrium dialysis chamber apparatus. In brief, an aliquot of compounds spiked plasma was added to the donor side of each designated well. An equal volume of phosphate buffer (0.002% Tween 80) was added to the receiver side. The plate was covered with adhesive sealing film to prevent evaporation and placed in a water bath at 37ºC for 5-8 h with a shaking speed at 80 rpm to reach protein binding equilibrium. Samples were taken from both sides, and analyzed using LC-MS/MS. The value of unbound fraction (fu) was determined by dividing the compounds concentration on the buffer side of the equilibrium dialysis chamber by the compounds concentration on the plasma side.[4]
In mouse BTK occupancy assays, treatment with BGB-3111 resulted in a dose-dependent BTK occupancy and showed about 3-fold more potency than ibrutinib in target organs, including PBMC and spleen. BGB-3111 induced dose-dependent anti-tumor effects against REC-1 MCL xenografts engrafted either subcutaneously or systemically via tail vein injection in mice. In the subcutaneous xenografts, BGB-3111 at 2.5 mg/kg BID showed similar activity as ibrutinib at 50 mg/kg QD, its clinical relevant dose. In the systemic model, the median survival of BGB-3111 25 mg/kg BID group was significantly longer than those of both ibrutinib 50 mg/kg QD and BID groups. In an ABC-subtype DLBCL (TMD-8) subcutaneous xenograft model, BGB-3111 also demonstrated better anti-tumor activity than ibrutinib. Preliminary 14-day toxicity study in rats showed that BGB-3111 was very well tolerated and maximal tolerate dose (MTD) was not reached when it was dosed up to 250mg/kg/day.[2]
ADME/Pharmacokinetics
Absorption, Distribution and Excretion
Following oral administration of zanubrutinib 160 mg twice daily and 320 mg once daily, the mean (%CV) zanubrutinib steady-state concentrations were 2,295 (37%) ng·h/mL and 2,180 (41%) ng·h/mL, respectively. The mean Cmax (%CV) was 314 (46%) ng/mL following 160 mg twice daily and 543 (51%) ng/mL following 320 mg once daily. The Cmax and AUC of zanubrutinib increase in a dose-proportional manner and there is minimal systemic accumulation after repeated dosing. The median Tmax is 2 hours.
Following oral administration of 320 mg radiolabelled zanubrutinib, approximately 87% of the dose was excreted in the feces and about 8% of the dose was recovered in the urine, where less than 1% of the recovered drug comprised of unchanged parent drug.
The geometric mean (%CV) apparent steady-state Vd is 881 (95%) L. The blood-to­ plasma ratio is about 0.7 to 0.8.
The mean (%CV) apparent oral clearance (CL/F) of zanubrutinib is 182 (37%) L/h.
Metabolism / Metabolites
Zanubrutinib is predominantly metabolized by CYP3A4. Its metabolites have not been characterized.
Biological Half-Life
Following administration of a single oral dose of 160 mg or 320 mg of zanubrutinib, the mean half-life is approximately 2 to 4 hours.
Toxicity/Toxicokinetics
Hepatotoxicity
In the prelicensure clinical trials of zanubrutinib in patients with mantle cell lymphoma, liver test abnormalities were frequent although usually mild. ALT elevations arose in 28% and bilirubin levels in 24% of subjects, but were above 5 times the upper limit of normal (ULN) in less than 1%. In these trials that enrolled over 600 patients, there were no reports of clinically apparent liver injury, early discontinuations because of liver injury or liver related deaths. Nonetheless, other Bruton’s kinase inhibitors (ibrutinib, acalabrutinib) have been associated with rare cases of acute liver injury including acute liver failure. With those agents, the latency to onset of liver injury varied from several weeks to 9 months. The injury was typically hepatocellular and immunologic features were uncommon. While the pattern of injury was hepatocellular, the course was atypical of an acute hepatitis-like injury and more similar to acute hepatic necrosis with early onset of hepatic failure. Other Bruton’s kinase inhibitors have also been linked to several instances of reactivation of hepatitis B that can be severe and has been linked to fatal outcomes.
Likelihood score: E* (unproven but suspected cause of clinically apparent liver injury including reactivation of hepatitis B in susceptible patients).
Effects During Pregnancy and Lactation
◉ Summary of Use during Lactation
No information is available on the clinical use of zanubrutinib during breastfeeding. Because zanubrutinib is 94% bound to plasma proteins, the amount in milk is likely to be low. The manufacturer recommends that breastfeeding be discontinued during zanubrutinib therapy and for at least 2 weeks after the last dose.
◉ Effects in Breastfed Infants
Relevant published information was not found as of the revision date.
◉ Effects on Lactation and Breastmilk
Relevant published information was not found as of the revision date.
Protein Binding
The plasma protein binding of zanubrutinib is approximately 94%.
References

[1]. Cancer Cell. 2015 Aug 10;28(2):225-39.

[2]. Cancer Res (2015) 75 (15_Supplement): 2597.

[3]. J Hematol Oncol . 2016 Sep 2;9(1):80.

[4]. J Med Chem . 2019 Sep 12;62(17):7923-7940.

Additional Infomation
Pharmacodynamics
Zanubrutinib is an immunomodulating agent that decreases the survival of malignant B cells. It inhibits BTK by binding to its active site. It works to inhibit the proliferation and survival of malignant B cells to reduce the tumour size in mantle cell lymphoma.
These protocols are for reference only. InvivoChem does not independently validate these methods.
Physicochemical Properties
Molecular Formula
C27H29N5O3
Molecular Weight
471.56
Exact Mass
471.227
Elemental Analysis
C, 68.77; H, 6.20; N, 14.85; O, 10.18
CAS #
1691249-45-2
Related CAS #
(±)-Zanubrutinib;1633350-06-7;(R)-Zanubrutinib;1691249-44-1;Zanubrutinib-d5
PubChem CID
135565884
Appearance
White to off-white solid powder
Density
1.3±0.1 g/cm3
Boiling Point
713.4±60.0 °C at 760 mmHg
Flash Point
385.2±32.9 °C
Vapour Pressure
0.0±2.3 mmHg at 25°C
Index of Refraction
1.680
LogP
3.64
Hydrogen Bond Donor Count
2
Hydrogen Bond Acceptor Count
5
Rotatable Bond Count
6
Heavy Atom Count
35
Complexity
756
Defined Atom Stereocenter Count
1
SMILES
O=C(C=C)N1CCC(CC1)[C@]1([H])CCNC2=C(C(N)=O)C(C3C=CC(=CC=3)OC3C=CC=CC=3)=NN12
InChi Key
RNOAOAWBMHREKO-QFIPXVFZSA-N
InChi Code
InChI=1S/C27H29N5O3/c1-2-23(33)31-16-13-18(14-17-31)22-12-15-29-27-24(26(28)34)25(30-32(22)27)19-8-10-21(11-9-19)35-20-6-4-3-5-7-20/h2-11,18,22,29H,1,12-17H2,(H2,28,34)/t22-/m0/s1
Chemical Name
(7S)-2-(4-phenoxyphenyl)-7-(1-prop-2-enoylpiperidin-4-yl)-4,5,6,7-tetrahydropyrazolo[1,5-a]pyrimidine-3-carboxamide
Synonyms
BGB-3111; BGB 3111; Brukinsa; BGB-3111; AG9MHG098Z; Zanubrutinib [INN]; Zanubrutinib [USAN]; BGB3111
HS Tariff Code
2934.99.9001
Storage

Powder      -20°C    3 years

                     4°C     2 years

In solvent   -80°C    6 months

                  -20°C    1 month

Shipping Condition
Room temperature (This product is stable at ambient temperature for a few days during ordinary shipping and time spent in Customs)
Solubility Data
Solubility (In Vitro)
DMSO: ≥ 50 mg/mL
Water: <1 mg/mL
Ethanol: <1 mg/mL
Solubility (In Vivo)
Solubility in Formulation 1: ≥ 2.08 mg/mL (4.41 mM) (saturation unknown) in 10% DMSO + 40% PEG300 + 5% Tween80 + 45% Saline (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 400 μL PEG300 and mix evenly; then add 50 μL Tween-80 to the above solution and mix evenly; then add 450 μL normal saline to adjust the volume to 1 mL.
Preparation of saline: Dissolve 0.9 g of sodium chloride in 100 mL ddH₂ O to obtain a clear solution.

Solubility in Formulation 2: ≥ 2.08 mg/mL (4.41 mM) (saturation unknown) in 10% DMSO + 90% (20% SBE-β-CD in Saline) (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of 20% SBE-β-CD physiological saline solution and mix evenly.
Preparation of 20% SBE-β-CD in Saline (4°C,1 week): Dissolve 2 g SBE-β-CD in 10 mL saline to obtain a clear solution.

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Solubility in Formulation 3: ≥ 2.08 mg/mL (4.41 mM) (saturation unknown) in 10% DMSO + 90% Corn Oil (add these co-solvents sequentially from left to right, and one by one), clear solution.
For example, if 1 mL of working solution is to be prepared, you can add 100 μL of 20.8 mg/mL clear DMSO stock solution to 900 μL of corn oil and mix evenly.


 (Please use freshly prepared in vivo formulations for optimal results.)
Preparing Stock Solutions 1 mg 5 mg 10 mg
1 mM 2.1206 mL 10.6031 mL 21.2062 mL
5 mM 0.4241 mL 2.1206 mL 4.2412 mL
10 mM 0.2121 mL 1.0603 mL 2.1206 mL

*Note: Please select an appropriate solvent for the preparation of stock solution based on your experiment needs. For most products, DMSO can be used for preparing stock solutions (e.g. 5 mM, 10 mM, or 20 mM concentration); some products with high aqueous solubility may be dissolved in water directly. Solubility information is available at the above Solubility Data section. Once the stock solution is prepared, aliquot it to routine usage volumes and store at -20°C or -80°C. Avoid repeated freeze and thaw cycles.

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Note: Chemical formula is case sensitive: C12H18N3O4  c12h18n3o4
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In vivo Formulation Calculator (Clear solution)
Step 1: Enter information below (Recommended: An additional animal to make allowance for loss during the experiment)
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Working concentration mg/mL;

Method for preparing DMSO stock solution mg drug pre-dissolved in μL DMSO (stock solution concentration mg/mL). Please contact us first if the concentration exceeds the DMSO solubility of the batch of drug.

Method for preparing in vivo formulation:Take μL DMSO stock solution, next add μL PEG300, mix and clarify, next addμL Tween 80, mix and clarify, next add μL ddH2O,mix and clarify.

(1) Please be sure that the solution is clear before the addition of next solvent. Dissolution methods like vortex, ultrasound or warming and heat may be used to aid dissolving.
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Clinical Trial Information
NCT Number Recruitment interventions Conditions Sponsor/Collaborators Start Date Phases
NCT05356858 Recruiting Drug: zanubrutinib Neuromyelitis Optica Xuanwu Hospital, Beijing May 7, 2022 Phase 2
NCT05199909 Recruiting Drug: zanubrutinib Treatment
Thrombocytopenia
Zhang Lei, MD January 25, 2022 Phase 2
NCT05320575 Recruiting Drug: Zanubrutinib HLH Beijing Friendship Hospital January 26, 2021 Phase 3
NCT06029309 Not yet recruiting Drug: Zanubrutinib
Drug: Tafasitamab
Mantle Cell Lymphoma Alvaro Alencar, MD December 2023 Phase 1
Phase 2
NCT04172246 Active
Recruiting
Drug: Zanubrutinib Mature B-cell Malignancies BeiGene January 29, 2020 Phase 1
Phase 2
Biological Data
  • Aberrant activation of Bruton’s tyrosine kinase (BTK) plays an important role in pathogenesis of B-cell lymphomas, suggesting that inhibition of BTK is useful in the treatment of hematological malignancies. J Med Chem . 2019 Sep 12;62(17):7923-7940.
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